get_ropenms: Get ropenms handle

In Roestlab/DIAlign: Dynamic Programming Based Alignment of MS2 Chromatograms

Description

Python path can also be set using Sys.setenv(RETICULATE_PYTHON = pythonPath). Also, remove .Rhistory file to avoid conflict with previously used python version.

Usage

get_ropenms(pythonPath = NULL, condaEnv = NULL, useConda = TRUE)

Arguments

pythonPath	(string) path of the python program that has pyopenms module.
condaEnv	(string) name of the conda environment that has pyopenms module.
useConda	(logical) TRUE: Use conda environment. FALSE: Use python through pythonPath.

Value

(pyopenms module)

Author(s)

Shubham Gupta, [e-mail]

ORCID: 0000-0003-3500-8152

License: (c) Author (2020) + GPL-3 Date: 2020-06-06

Examples

## Not run: 
  ropenms <- get_ropenms(condaEnv = "envName", useConda=TRUE)

## End(Not run)

Roestlab/DIAlign documentation built on Feb. 25, 2021, 5:18 p.m.