oswFiles_DIAlignR: Analytes information from osw files
In Roestlab/DIAlign: Dynamic Programming Based Alignment of MS2 Chromatograms
Description
Usage
Format
Source
Description
analytes info from three SWATH runs:
run0 : hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt.chrom.mzML
run1 : hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
run2 : hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
Usage
1
Format
A list of three elements where each element consists of a dataframe:
- transition_group_id
ID of each peptide
- RT
Retention time, in sec
- intensity
Inensity of associated feature
- leftWidth
Left width of the peak, in sec
- rightWidth
Right width of the peak, in sec
- peak_group_rank
Ranking of associated feature
- m_score
qvalue of associated feature
Source
Raw files are downloaded from Peptide Atlas.
File test_GenerateData.R has source code
to generate the example data.
Roestlab/DIAlign documentation built on Feb. 25, 2021, 5:18 p.m.
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Description Usage Format Source
Description
analytes info from three SWATH runs:
run0 : hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt.chrom.mzML
run1 : hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
run2 : hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
Usage
1 |
Format
A list of three elements where each element consists of a dataframe:
- transition_group_id
ID of each peptide
- RT
Retention time, in sec
- intensity
Inensity of associated feature
- leftWidth
Left width of the peak, in sec
- rightWidth
Right width of the peak, in sec
- peak_group_rank
Ranking of associated feature
- m_score
qvalue of associated feature
Source
Raw files are downloaded from Peptide Atlas. File test_GenerateData.R has source code to generate the example data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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