Description Usage Arguments Value Author(s) Examples
View source: R/get_filenames.R
Get intersection of runs and fileInfo
1 | updateFileInfo(fileInfo, runs = NULL)
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fileInfo |
(data-frame) output of getRunNames function. |
runs |
(vector of string) names of mzML files without extension. |
(dataframe) it has five columns:
spectraFile |
(string) as mentioned in RUN table of osw files. |
runName |
(string) contain respective mzML names without extension. |
spectraFileID |
(string) ID in RUN table of osw files. |
featureFile |
(string) path to the feature file. |
chromatogramFile |
(string) path to the chromatogram file. |
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2020) + GPL-3 Date: 2020-04-15
1 2 3 4 5 | dataPath <- system.file("extdata", package = "DIAlignR")
fileInfo <- getRunNames(dataPath = dataPath, oswMerged = TRUE)
runs <- c("hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt",
"hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt")
updateFileInfo(fileInfo, runs)
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