In Rozen-Lab/cosmicsig: Mutational Signatures from COSMIC (Catalogue of Somatic Mutations in Cancer)

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

cosmicsig

Purpose

Mutational signatures data from COSMIC, the Catalogue Of Somatic Mutations In Cancer (https://cancer.sanger.ac.uk/signatures/). There are also some helper functions for handling COSMIC signatures.

Installation

Get the stable version

install.packages("cosmicsig")

Get the development version

Install cosmicsig from the master branch on GitHub:

if (!requireNamespace("remotes", quietly = TRUE)) {
  install.packages("remotes")
}
remotes::install_github(repo = "Rozen-Lab/cosmicsig", ref = "master")

Reference manual

https://github.com/Rozen-Lab/cosmicsig/blob/v1.1.1-branch/cosmicsig_1.1.1.pdf

Rozen-Lab/cosmicsig documentation built on Sept. 3, 2023, 8:50 a.m.