API for SC-COSMO/sccosmomcma
Stanford-CIDE COronavirus Simulation MOdel (SC-COSMO) for Mexico City Metropolitan Area Analysis
| Global functions | |
|---|---|
| acomb | Source code |
| acor2cov | Man page Source code |
| add_intervention | Man page Source code |
| add_list_periods | Man page Source code |
| add_period | Man page Source code |
| aggregate_pop_ages | Man page Source code |
| calc_basic_reproduction_number_kr | Man page Source code |
| calc_deaths_totals | Man page Source code |
| calc_deathsdx_totals | Man page Source code |
| calc_dx_hosp | Man page Source code |
| calc_dx_hosp_icu | Man page Source code |
| calc_dx_hosp_nonicu | Man page Source code |
| calc_dx_inchosp | Man page Source code |
| calc_dx_inchosp_icu | Man page Source code |
| calc_dx_inchosp_nonicu | Man page Source code |
| calc_dx_totals | Man page Source code |
| calc_dxcum_totals | Man page Source code |
| calc_dxinc_totals | Man page Source code |
| calc_expinf_totals | Man page Source code |
| calc_idx_totals | Man page Source code |
| calc_idxcum_totals | Man page Source code |
| calc_idxinc_totals | Man page Source code |
| calc_incdeathsdx_totals | Man page Source code |
| calc_inf_totals | Man page Source code |
| calc_infcum_totals | Man page Source code |
| calc_infinc_totals | Man page Source code |
| calc_popsize_totals | Man page Source code |
| calc_rec_totals | Man page Source code |
| calc_reproduction_number_wt | Man page Source code |
| calc_sx_totals | Man page Source code |
| calibration_out | Man page Source code |
| compute_inflows | Man page Source code |
| cosmo | Man page Source code |
| cosmo_dXdt | Man page Source code |
| cosmo_dXdt_comp | Man page |
| gen_all_betas | Man page Source code |
| gen_all_intervention_effects | Man page Source code |
| gen_all_waifws | Man page Source code |
| gen_hh_n | Man page Source code |
| gen_hosp_targets | Man page Source code |
| gen_household_matrices_mc_seir | Man page Source code |
| gen_household_transmission_mc_seir | Man page Source code |
| gen_targets | Man page Source code |
| gen_time_varying | Man page Source code |
| general_logit | Man page Source code |
| get_MCMA_prop_hosp | Man page Source code |
| get_betas | Man page Source code |
| get_bounds | Man page Source code |
| get_case_detection | Man page Source code |
| get_cfr | Man page Source code |
| get_const_multiage_list | Man page Source code |
| get_contact_matrices_world | Man page Source code |
| get_contact_matrix | Man page Source code |
| get_countrycode | Man page Source code |
| get_cum_mort_risk | Man page Source code |
| get_densities | Man page Source code |
| get_densities_mx | Man page Source code |
| get_fipscodes_mx | Man page Source code |
| get_gamma_params | Man page Source code |
| get_hosp_bounds | Man page Source code |
| get_idx_scale_factor | Man page Source code |
| get_ifr | Man page Source code |
| get_intervention_effects | Man page Source code |
| get_lifetables | Man page Source code |
| get_lifetables_mx | Man page Source code |
| get_non_const_multiage_list | Man page Source code |
| get_os | Man page Source code |
| get_parameters | Man page Source code |
| get_population_ages | Man page Source code |
| get_population_ages_mx | Man page Source code |
| get_population_birth | Man page Source code |
| get_population_birth_mx | Man page Source code |
| get_projection_scenarios | Man page Source code |
| get_prop_hosp | Man page Source code |
| get_screen_detection | Man page Source code |
| get_waifw | Man page Source code |
| hosp_acor2cov | Man page Source code |
| hosp_calibration_out | Man page Source code |
| hosp_likelihood | Man page Source code |
| hosp_log_lik | Man page Source code |
| hosp_log_lik_opt | Man page Source code |
| hosp_log_lik_par | Man page Source code |
| hosp_log_post | Man page Source code |
| hosp_log_post_opt | Man page Source code |
| hosp_log_prior | Man page Source code |
| hosp_log_prior_opt | Man page Source code |
| hosp_posterior | Man page Source code |
| hosp_prior | Man page Source code |
| hosp_sample_prior | Man page Source code |
| likelihood | Man page Source code |
| load_all_params | Man page Source code |
| load_params_init | Man page Source code |
| log_lik | Man page Source code |
| log_lik_opt | Man page Source code |
| log_lik_par | Man page Source code |
| log_post | Man page Source code |
| log_post_opt | Man page Source code |
| log_prior | Man page Source code |
| log_prior_opt | Man page Source code |
| m_general_logit | Man page Source code |
| make_intervention | Man page Source code |
| make_period | Man page Source code |
| number_ticks | Man page Source code |
| obtain_init_pop | Man page Source code |
| obtain_setting_data | Man page Source code |
| plot_cosmo_data | Man page Source code |
| plot_deaths_totals | Man page Source code |
| plot_deathsdx_totals | Man page Source code |
| plot_dx_totals | Man page Source code |
| plot_dxcum_totals | Man page Source code |
| plot_dxinc_totals | Man page Source code |
| plot_expinf_totals | Man page Source code |
| plot_hosp_prop | Man page Source code |
| plot_hosp_targets | Man page Source code |
| plot_idx_totals | Man page Source code |
| plot_idxcum_totals | Man page Source code |
| plot_idxinc_totals | Man page Source code |
| plot_incdeathsdx_totals | Man page Source code |
| plot_inf_totals | Man page Source code |
| plot_infcum_totals | Man page Source code |
| plot_infinc_totals | Man page Source code |
| plot_model_out_vs_targets | Man page Source code |
| plot_mort_risk | Man page Source code |
| plot_popsize_totals | Man page Source code |
| plot_rec_totals | Man page Source code |
| plot_sx_totals | Man page Source code |
| plot_targets | Man page Source code |
| posterior | Man page Source code |
| prep_dx_hosp_calib | Man page Source code |
| prep_dx_hospitalizations | Man page Source code |
| prior | Man page Source code |
| project_epi_out | Man page Source code |
| project_interventions_probabilistic | Man page Source code |
| sample.prior | Man page Source code |
| sccosmo | Man page |
| summarise_data | Man page Source code |
| update_param_list | Man page Source code |
| validate_out | Man page Source code |
| wrangle_contact_matrix | Man page Source code |
