Files in SC-COSMO/sccosmomcma
Stanford-CIDE COronavirus Simulation MOdel (SC-COSMO) for Mexico City Metropolitan Area Analysis

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DESCRIPTION

LICENSE

NAMESPACE

R/01_contact_matrix.R R/01_cumulative_mortality_risk.R R/01_densities.R R/01_household_model_inputs_functions.R R/01_intervention_construction_functions.R R/01_lifetables.R R/01_model_inputs_functions.R R/01_population_ages.R R/01_population_birth.R R/01_time_varying_functions.R R/02_beta_mixing_interventions_functions.R R/02_case_detection_functions.R R/02_cases_functions.R R/02_decision_household_model_functions.R R/02_decision_model_functions.R R/02_hospital_model_functions.R R/02_model_output_calc_plot_functions.R R/02_mortality_functions.R R/02_parameter_lookup_functions.R R/02_screen_detection_functions.R R/03_calibration_functions.R R/03_hosp_calibration_functions.R R/03_hosp_prop_functions.R R/03_hosp_target_functions.R R/03_target_functions.R R/04_validation_functions.R R/05_projections_functions.R R/get_os.R R/number_ticks.R R/sccosmomcma.R README.Rmd README.md To-Dos.md analysis/01_social_distancing.R analysis/01_test_run.R analysis/03_IMIS_posterior_visualization.R analysis/03_calibration.R analysis/03_hosp_calibration.R analysis/04_validation.R analysis/05_figures_paper.R analysis/05_figures_paper_SA.R analysis/05_projections.R analysis/changes.R analysis/generate_cfr.R analysis/pop_size.R

data-raw/covid_ssa_state_2020-12-13.csv

data-raw/covid_ssa_state_age_groups_2020-12-13.csv

data-raw/df_interventions_loc_raw_2020-12-29.rda

data-raw/df_pop_ZMVM.Rdata

data-raw/df_pop_county.Rdata

data-raw/ssa_covid_surv_pos_MCMA_2020-12-13.RData

data/MCMA_calibration_data_SA_2020-12-13.RData

data/MCMA_calibration_data_SQ_2020-12-13.RData

data/MortalityRisk_MCMA_2020-12-13.csv

data/df_MEX_codes.rda

data/df_NPIs_2020-12-13.rda

data/df_NPIs_2020-12-29.RData

data/df_age_first_case_mex.rda

data/df_contacts_src_world.rda

data/df_covid_proportions.rda

data/df_densities_mx.rda

data/df_hosp_MCMA.RData

data/df_hosp_MCMA_2020-12-21.RData

data/df_lifetables_mx.rda

data/df_pop_age_mx.rda

data/df_pop_birth_mx.rda

data/df_pop_size_SA.rda

data/df_pop_size_SQ.rda

data/hosp_prop_data_SA_2020-12-13.RData

data/hosp_prop_data_SQ_2020-12-13.RData

data/l_contact_matrices.rda

data/l_hosp_prop_2020-12-13.RData

data/l_targets.RData

data/l_targets_2020-12-13.RData

data/m_cfr_SA.RData

data/m_cfr_SQ.RData

docs/.DS_Store

output/03_map_output_IMIS_MCMA_SA_2020-12-13.RData

output/03_map_output_IMIS_MCMA_SQ_2020-12-13.RData

output/03_map_output_hosp_NM_MCMA_SA_2020-12-13.RData

output/03_map_output_hosp_NM_MCMA_SQ_2020-12-13.RData

output/03_summary_posterior_IMIS_MCMA_SA_2020-12-13.RData

output/03_summary_posterior_IMIS_MCMA_SQ_2020-12-13.RData

output/04_validation_IMIS_MCMA_SA_2020-12-13.RData

output/04_validation_IMIS_MCMA_SQ_2020-12-13.RData

output/05_projections_probabilistic_MCMA_2020-12-13.RData

output/05_projections_probabilistic_SA_MCMA_2020-12-13.RData

output/05_projections_probabilistic_SQ_MCMA_2020-12-13.RData

sccosmomcma.Rproj

tables/03_summary_posterior_IMIS_MCMA_SA_2020-12-13.csv

tables/03_summary_posterior_IMIS_MCMA_SQ_2020-12-13.csv

SC-COSMO/sccosmomcma documentation built on Dec. 18, 2021, 11:56 a.m.

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SC-COSMO/sccosmomcma
Stanford-CIDE COronavirus Simulation MOdel (SC-COSMO) for Mexico City Metropolitan Area Analysis

Files in SC-COSMO/sccosmomcma
Stanford-CIDE COronavirus Simulation MOdel (SC-COSMO) for Mexico City Metropolitan Area Analysis

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SC-COSMO/sccosmomcma Stanford-CIDE COronavirus Simulation MOdel (SC-COSMO) for Mexico City Metropolitan Area Analysis

Files in SC-COSMO/sccosmomcma Stanford-CIDE COronavirus Simulation MOdel (SC-COSMO) for Mexico City Metropolitan Area Analysis

R Package Documentation

Browse R Packages

We want your feedback!

SC-COSMO/sccosmomcma
Stanford-CIDE COronavirus Simulation MOdel (SC-COSMO) for Mexico City Metropolitan Area Analysis

Files in SC-COSMO/sccosmomcma
Stanford-CIDE COronavirus Simulation MOdel (SC-COSMO) for Mexico City Metropolitan Area Analysis