API for Sage-Bionetworks/sageseqr
Identify differentially expressed genes counts data
| Global functions | |
|---|---|
| Mclust | Man page |
| association_statistic_for_factors | Man page Source code |
| association_statistics_for_both | Man page Source code |
| biomart_obj | Man page Source code |
| biomart_stats | Man page Source code |
| boxplot_vars | Man page Source code |
| build_formula | Man page Source code |
| check_mismatch | Man page Source code |
| clean_covariates | Man page Source code |
| coerce_continuous | Man page Source code |
| coerce_factors | Man page Source code |
| collapse_duplicate_hgnc_symbol | Man page Source code |
| complete_path | Man page Source code |
| compute_residuals | Man page |
| conditional_plot_sexcheck | Man page |
| convert_geneids | Man page Source code |
| correlate_and_plot | Man page Source code |
| cqn | Man page Source code |
| differential_expression | Man page Source code |
| dropped_genes | Man page |
| filter_genes | Man page Source code |
| get_association_statistics | Man page Source code |
| get_biomart | Man page Source code |
| get_data | Man page Source code |
| gtf_stats | Man page Source code |
| identify_outliers | Man page |
| mclustBIC | Man page |
| parse_counts | Man page Source code |
| plot_coexpression | Man page Source code |
| plot_pcs_with_covariates | Man page Source code |
| plot_sexcheck | Man page Source code |
| plot_sexcheck_pca | Man page |
| plot_volcano | Man page |
| prepare_results | Man page |
| provenance_helper | Man page |
| reexports | Man page |
| rq | Man page |
| run_pca | Man page Source code |
| run_pca_and_plot_correlations | Man page Source code |
| simple_filter | Man page Source code |
| start_de | Man page |
| stepwise_regression | Man page Source code |
| store_results | Man page |
| summarize_biotypes | Man page |
| threshold_fdr | Man page Source code |
| wrap_de | Man page Source code |
