parse_counts: Subset counts data frame
In Sage-Bionetworks/sageseqr: Identify differentially expressed genes counts data
parse_counts R Documentation
Subset counts data frame
Description
The biomaRt query requires only gene identifiers to be passed as input. Some alignment
output combines additional metadata with the counts file. This function will remove
extraneous rows and is especially meant to address output from the STAR aligner.
Usage
parse_counts(count_df)
Arguments
count_df
A counts data frame with sample identifiers as column names
and gene Ids are rownames.
Sage-Bionetworks/sageseqr documentation built on June 13, 2024, 2:11 p.m.
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| parse_counts | R Documentation |
Subset counts data frame
Description
The biomaRt query requires only gene identifiers to be passed as input. Some alignment output combines additional metadata with the counts file. This function will remove extraneous rows and is especially meant to address output from the STAR aligner.
Usage
parse_counts(count_df)
Arguments
count_df |
A counts data frame with sample identifiers as column names and gene Ids are rownames. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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