provenance_helper: Provenance helper

In Sage-Bionetworks/sageseqr: Identify differentially expressed genes counts data

Provenance helper

Description

Collapse Synapse Ids and version.

Usage

provenance_helper(
  metadata_id,
  counts_id,
  metadata_version = NULL,
  counts_version = NULL,
  biomart_id = NULL,
  biomart_version = NULL
)

Arguments

metadata_id	Synapse ID to clean metadata file with sample identifiers in a column and variables of interest as column names. There cannot be any missing values.
counts_id	Synapse ID to counts data frame with identifiers to the metadata as column names and gene ids in a column.
metadata_version	Optionally, include Synapse file version number. If omitted, current version will be downloaded.
counts_version	Optionally, include Synapse file version number.
biomart_id	Synapse ID to biomart object.
biomart_version	Optionally, include Synapse file version number.

Sage-Bionetworks/sageseqr documentation built on June 13, 2024, 2:11 p.m.