Man pages for Scavetta/complexomics
Complexome Profiling Analysis package
| allPeptidesPlot | Create scatter plot |
| assignClusters | Create a data frames with cluster assignment |
| cleanData | Clean raw peptide complexomics data |
| clusterComp | Create components necessary for clustering |
| compranApp | Execute the complexomics Shiny app |
| exportClusterAssignments | Covert clustered tables into format for export |
| extractRepPeps | Extract Only Data Belonging to Representative Peptide |
| getNormTable | Get normalised table for all proteins |
| groupHeatMap | Make heatmap |
| makeBarPlotClusterSummary | Title |
| makeDist | Make disstance matrix |
| normalizeTable | Convert extractRepPeps output to a Matrix |
| normTableForExport | Convert Normalized Dataframe to Export format |
| normTableWideToLong | Convert Normalized Dataframe To Long format |
| oneGroupTwoLabelsCoMigration | Compare a Single Group of Proteins Between Two Label States |
| onlyInOneLabelState | Report Proteins Present In Only One Label State |
| peptideImport | Import raw peptide complexomics data |
| pickPeptide | Select Top Peptide For Various Scenarios |
| proteinPlot | Create Line Plots |
| protImportForAnalysis | Modify import protein data |
| simplifyProteins | Simplify Raw Proteins file |
| splitModLab | Split Modification and Label tags |
| toFilter | Optional Filtering For Raw Data |
| twoGroupsWithinLabelCoMigration | Compare a Two Groups of Proteins Within One Label State |
| uncenteredCor | Perform uncentered correlation |
