protImportForAnalysis: Modify import protein data

In Scavetta/complexomics: Complexome Profiling Analysis package

Modify import protein data

Description

This function converts imported protien table into format compatible with downstream analysis Imported file needs to contain following columns:

• "Protein Group Accessions" - character/factor

• "Protein Descriptions" - character

• "scenario" - character/factor

• "label" - logical

• columns "1" to "n" - numeric

Usage

protImportForAnalysis(inputFile)

Arguments

inputFile

- character vector containing the location of protein file

Value

data frame

Examples

##Use example normalised proteins file
inputFile <- system.file("extData", "dataNormProts.txt", package = "ComPrAn")
#read file in and change structure of table to required format
forAnalysis <- protImportForAnalysis(inputFile)

Scavetta/complexomics documentation built on Oct. 1, 2022, 2:15 a.m.