splitModLab: Split Modification and Label tags

In Scavetta/complexomics: Complexome Profiling Analysis package

Split Modification and Label tags

Description

Splits up the Modifications column into lists of vectors for modifications(Mods) and labels(Labels) It adds two more columns to the data frame:

• UniqueCombinedID_A: Unique combinations of Sequence, Mods and Charge for "scenario A".

• UniqueCombinedID_B: Unique combinations of Sequence, Mods, Charge and Labels for "scenario B"

Usage

splitModLab(.data)

Arguments

.data

dataframe

Value

dataframe

Examples

##Use example peptide data set, read in and clean data
inputFile <- system.file("extData", "data.txt", package = "ComPrAn")
peptides <- peptideImport(inputFile)
peptides <- cleanData(peptides, fCol = "Search ID")
## separate chemical modifications and labelling into separate columns
peptides <- splitModLab(peptides) 

Scavetta/complexomics documentation built on Oct. 1, 2022, 2:15 a.m.