extractRepPeps: Extract Only Data Belonging to Representative Peptide

In Scavetta/complexomics: Complexome Profiling Analysis package

Extract Only Data Belonging to Representative Peptide

Description

Incomplete labelling - there are cases when in peptides containing multiple Lys/Arg not all of them are heavy in labelled samples. As in SILAC we assume that addition of label does not affect peptide properties, we are taking a mean 'Precursor Area' value as the representative 'Precursor Area' in such cases.

Usage

extractRepPeps(.data, scenario, label = "Label neccessary for scenario A")

Arguments

.data	dataframe containing all peptides of one protein
scenario	character "A", or "B"
label	character, selects for which label state the representative peptides will be exported, can have value of "TRUE" or "FALSE", required only for scenario "A"

Value

dataframe containing only representative peptide

Scavetta/complexomics documentation built on Oct. 1, 2022, 2:15 a.m.