Files in SchlossLab/mikropml
User-Friendly R Package for Supervised Machine Learning Pipelines

.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md .github/CONTRIBUTING.md .github/ISSUE_TEMPLATE/issue_template.md .github/SUPPORT.md .github/pull_request_template.md
.github/workflows/check.yml
.github/workflows/pr_build.yml
.github/workflows/test-coverage.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md R/checks.R R/corr_feats.R R/cross_val.R R/data.R R/feature_importance.R R/hyperparameters.R R/mikropml.R R/partition.R R/performance_metrics.R R/plot.R R/preprocess_data.R R/run_ml.R R/train_model.R R/utils.R README.Rmd README.md
_pkgdown.yml
cran-comments.md
data-raw/otu_large_bin.csv
data-raw/otu_large_multi.csv
data-raw/otu_mini_bin.R data-raw/otu_mini_continuous.R data-raw/otu_mini_multi.R data-raw/otu_small.R
data/otu_mini_bin.rda
data/otu_mini_bin_results_glmnet.rda
data/otu_mini_bin_results_rf.rda
data/otu_mini_bin_results_rpart2.rda
data/otu_mini_bin_results_svmRadial.rda
data/otu_mini_bin_results_xgbTree.rda
data/otu_mini_cont_results_glmnet.rda
data/otu_mini_cont_results_nocv.rda
data/otu_mini_cv.rda
data/otu_mini_multi.rda
data/otu_mini_multi_group.rda
data/otu_mini_multi_results_glmnet.rda
data/otu_small.rda
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/CONTRIBUTING.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/SUPPORT.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/index.html
docs/articles/introduction.html
docs/articles/introduction_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/introduction_files/anchor-sections-1.0/anchor-sections.css
docs/articles/introduction_files/anchor-sections-1.0/anchor-sections.js
docs/articles/introduction_files/header-attrs-2.1/header-attrs.js
docs/articles/introduction_files/header-attrs-2.10/header-attrs.js
docs/articles/introduction_files/header-attrs-2.6/header-attrs.js
docs/articles/mikRopML-pipeline.png
docs/articles/mikropml-logo.png
docs/articles/paper.html
docs/articles/paper_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/paper_files/anchor-sections-1.0/anchor-sections.css
docs/articles/paper_files/anchor-sections-1.0/anchor-sections.js
docs/articles/paper_files/header-attrs-2.10/header-attrs.js
docs/articles/paper_files/header-attrs-2.3/header-attrs.js
docs/articles/paper_files/header-attrs-2.6/header-attrs.js
docs/articles/paper_files/header-attrs-2.7/header-attrs.js
docs/articles/parallel.html
docs/articles/parallel_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/parallel_files/anchor-sections-1.0/anchor-sections.css
docs/articles/parallel_files/anchor-sections-1.0/anchor-sections.js
docs/articles/parallel_files/figure-html/customize_plot-1.png
docs/articles/parallel_files/figure-html/plot_perf-1.png
docs/articles/parallel_files/header-attrs-2.10/header-attrs.js
docs/articles/parallel_files/header-attrs-2.6/header-attrs.js
docs/articles/preprocess.html
docs/articles/preprocess_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/preprocess_files/anchor-sections-1.0/anchor-sections.css
docs/articles/preprocess_files/anchor-sections-1.0/anchor-sections.js
docs/articles/preprocess_files/header-attrs-2.10/header-attrs.js
docs/articles/preprocess_files/header-attrs-2.6/header-attrs.js
docs/articles/snakemake.html
docs/articles/tuning.html
docs/articles/tuning_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/tuning_files/anchor-sections-1.0/anchor-sections.css
docs/articles/tuning_files/anchor-sections-1.0/anchor-sections.js
docs/articles/tuning_files/figure-html/unnamed-chunk-9-1.png
docs/articles/tuning_files/header-attrs-2.10/header-attrs.js
docs/articles/tuning_files/header-attrs-2.6/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/pull_request_template.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/calc_aucs.html
docs/reference/calc_perf_metrics.html
docs/reference/change_to_num.html
docs/reference/check_features.html
docs/reference/check_group.html
docs/reference/check_groups.html
docs/reference/check_training_indices.html
docs/reference/collapse_correlated_features.html
docs/reference/combine_hp_performance.html
docs/reference/createGroupedDataPartition.html
docs/reference/create_grouped_data_partition.html
docs/reference/create_grouped_k_multifolds.html
docs/reference/define_cv.html
docs/reference/figures/logo.png
docs/reference/find_permuted_auc.html
docs/reference/find_permuted_perf_metric.html
docs/reference/flatten_corr_mat.html
docs/reference/get_caret_dummyvars_df.html
docs/reference/get_caret_processed_df.html
docs/reference/get_corr_feats.html
docs/reference/get_feature_importance.html
docs/reference/get_hp_performance.html
docs/reference/get_hyperparams_from_df.html
docs/reference/get_hyperparams_list.html
docs/reference/get_outcome_type.html
docs/reference/get_partition_indices.html
docs/reference/get_perf_metric_fn.html
docs/reference/get_perf_metric_name.html
docs/reference/get_performance_tbl.html
docs/reference/get_seeds_trainControl.html
docs/reference/get_tuning_grid.html
docs/reference/groupKMultiFolds.html
docs/reference/group_correlated_features.html
docs/reference/index.html
docs/reference/keep_groups_in_cv_partitions.html
docs/reference/mikropml.html
docs/reference/mutate_all_types.html
docs/reference/otu_large.html
docs/reference/otu_med_results.html
docs/reference/otu_medium.html
docs/reference/otu_mini.html
docs/reference/otu_mini_bin.html
docs/reference/otu_mini_bin_results_glmnet.html
docs/reference/otu_mini_bin_results_rf.html
docs/reference/otu_mini_bin_results_rpart2.html
docs/reference/otu_mini_bin_results_svmRadial.html
docs/reference/otu_mini_bin_results_xgbTree.html
docs/reference/otu_mini_cont_results1.html
docs/reference/otu_mini_cont_results_glmnet.html
docs/reference/otu_mini_cont_results_nocv.html
docs/reference/otu_mini_cv.html
docs/reference/otu_mini_cv2.html
docs/reference/otu_mini_multi.html
docs/reference/otu_mini_multi_group.html
docs/reference/otu_mini_multi_results_glmnet.html
docs/reference/otu_mini_results1.html
docs/reference/otu_mini_results2.html
docs/reference/otu_mini_results3.html
docs/reference/otu_mini_results4.html
docs/reference/otu_mini_results5.html
docs/reference/otu_sm_cv5.html
docs/reference/otu_small.html
docs/reference/plot_hp_performance-1.png
docs/reference/plot_hp_performance-2.png
docs/reference/plot_hp_performance.html
docs/reference/plot_model_performance-1.png
docs/reference/plot_model_performance.html
docs/reference/plot_performance.html
docs/reference/preprocess_data.html
docs/reference/process_cat_feats.html
docs/reference/process_cont_feats.html
docs/reference/process_novar_feats.html
docs/reference/randomize_feature_order.html
docs/reference/reexports.html
docs/reference/remove_singleton_columns.html
docs/reference/replace_spaces.html
docs/reference/rm_corr_feats.html
docs/reference/rm_missing_outcome.html
docs/reference/run_ml.html
docs/reference/set_hparams_regLogistic.html
docs/reference/setup_parallel.html
docs/reference/split_outcome_features.html
docs/reference/stop_parallel.html
docs/reference/test_data_mini.html
docs/reference/test_data_sm.html
docs/reference/tidy_perf_data.html
docs/reference/train_data_mini.html
docs/reference/train_data_sm.html
docs/reference/train_model.html
docs/reference/train_model_w_warnings.html
docs/reference/trained_model_mini.html
docs/reference/trained_model_sm1.html
docs/sitemap.xml
inst/CITATION
man/calc_perf_metrics.Rd man/combine_hp_performance.Rd man/define_cv.Rd
man/figures/logo.png
man/get_caret_processed_df.Rd man/get_feature_importance.Rd man/get_hp_performance.Rd man/get_hyperparams_list.Rd man/get_outcome_type.Rd man/get_partition_indices.Rd man/get_perf_metric_fn.Rd man/get_perf_metric_name.Rd man/get_performance_tbl.Rd man/get_tuning_grid.Rd man/group_correlated_features.Rd man/keep_groups_in_cv_partitions.Rd man/mikropml.Rd man/otu_mini_bin.Rd man/otu_mini_bin_results_glmnet.Rd man/otu_mini_bin_results_rf.Rd man/otu_mini_bin_results_rpart2.Rd man/otu_mini_bin_results_svmRadial.Rd man/otu_mini_bin_results_xgbTree.Rd man/otu_mini_cont_results_glmnet.Rd man/otu_mini_cont_results_nocv.Rd man/otu_mini_cv.Rd man/otu_mini_multi.Rd man/otu_mini_multi_group.Rd man/otu_mini_multi_results_glmnet.Rd man/otu_small.Rd man/plot_hp_performance.Rd man/plot_model_performance.Rd man/preprocess_data.Rd man/randomize_feature_order.Rd man/reexports.Rd man/remove_singleton_columns.Rd man/replace_spaces.Rd man/run_ml.Rd man/tidy_perf_data.Rd man/train_model.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
revdep/.gitignore
revdep/email.yml
tests/testthat.R tests/testthat/test-checks.R tests/testthat/test-corr_feats.R tests/testthat/test-cross_val.R tests/testthat/test-feature_importance.R tests/testthat/test-hyperparameters.R tests/testthat/test-partition.R tests/testthat/test-performance_metrics.R tests/testthat/test-plot.R tests/testthat/test-preprocess_data.R tests/testthat/test-run_ml.R tests/testthat/test-train_model.R tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/introduction.Rmd vignettes/mikRopML-pipeline.pdf
vignettes/mikRopML-pipeline.png
vignettes/mikRopML-pipeline.pptx
vignettes/mikropml-logo.png
vignettes/paper.Rmd
vignettes/paper.bib
vignettes/paper.md vignettes/parallel.Rmd vignettes/preprocess.Rmd vignettes/review-responses.md vignettes/tuning.Rmd
SchlossLab/mikropml documentation built on Nov. 25, 2021, 1:13 p.m.