Files in SchwartzLab/brainSTORM
brainSTORM. A package to process STORM-seq based data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/brainSTORM-package.R
R/core_STORM.R
R/core_in_WEXAC.R
R/data.R
R/deprecated.R
R/helpers_STORM.R
R/metrics.R
R/plots_storm.R
R/process_STORM.R
R/setup_STORM.R
R/sysdata.rda
R/wishlist.R
README.Rmd
README.md
brainSTORM.Rproj
data-raw/DATASET.R
data/Nm_scores.rda
data/RNAmods_vec.rda
data/Y_scores.rda
data/ac4C_scores.rda
data/m1A_scores.rda
data/m3U_scores.rda
data/m5C_scores.rda
data/m7G_scores.rda
data/rRNAmods_Sc_Taoka.rda
data/storm_baseCols.rda
data/storm_baseCoorCols.rda
data/yeast_STORM.rda
man/Nm_scores.Rd
man/RNAmods_vec.Rd
man/Y_scores.Rd
man/ac4C_scores.Rd
man/addKnownRNAmods.Rd
man/add_2OmeScore.Rd
man/add_CtoT_MRD.Rd
man/add_CytPer.Rd
man/add_DR.Rd
man/add_DRD.Rd
man/add_ER.Rd
man/add_ER1bpDS.Rd
man/add_ERlog2FCh.Rd
man/add_ERlog2FCh1bpDS.Rd
man/add_MR.Rd
man/add_MRD.Rd
man/add_SR.Rd
man/add_SR1bpDS.Rd
man/add_SRD.Rd
man/add_SRD1bpDS.Rd
man/add_SRlog2FCh1bpDS.Rd
man/add_default_metrics_v1.Rd
man/add_default_metrics_v2.Rd
man/add_scoreA3p.Rd
man/add_scoreA5p.Rd
man/add_scoreC3p.Rd
man/add_scoreZ_3p.Rd
man/alignSTAR.Rd
man/bam2TxDT.Rd
man/bisGenome.Rd
man/brainSTORM-package.Rd
man/call_RNAmods_logRegMods.Rd
man/fastq_nucFreq.Rd
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-maturing.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-stable.svg
man/figures/lifecycle-superseded.svg
man/figures/logo.png
man/gg_lce.Rd
man/gg_nucFreq.Rd
man/gg_readStats.Rd
man/hlp_assign_scores.Rd
man/hlp_start_CALLS.Rd
man/libComplexReport.Rd
man/m1A_scores.Rd
man/m3U_scores.Rd
man/m5C_scores.Rd
man/m7G_scores.Rd
man/mkBedFromFastaTxOme.Rd
man/mkSTARgenome.Rd
man/mkTranscriptome.Rd
man/rRNAmods_Sc_Taoka.Rd
man/reads_report.Rd
man/rmTmpDir.Rd
man/storm_META.Rd
man/storm_STORM.Rd
man/storm_assignScores.Rd
man/storm_baseCols.Rd
man/storm_baseCoorCols.Rd
man/storm_evalPreds.Rd
man/storm_metricsBoxPlot_byNuc.Rd
man/storm_metricsScatterPlot_byPos.Rd
man/storm_plot_confMat.Rd
man/yeast_STORM.Rd
vignettes/.gitignore
vignettes/Using_brainSTORM_at_WEXAC.Rmd
