R/data.R

In SchwartzLab/brainSTORM: brainSTORM. A package to process STORM-seq based data

#' STORM base columns
#'
#' Used internally by brainSTORM but may be useful
#'
#' @format character
#'
"storm_baseCols"

#' STORM base coordinate columns
#'
#' Used internally by brainSTORM but may be useful
#'
#' @format character
#'
"storm_baseCoorCols"

#' STORM base coordinate columns
#'
#' Used internally by brainSTORM but may be useful
#'
#' @format character
#'
"RNAmods_vec"


#' Pseudouridine scores
#'
#' @format character
#'
"Y_scores"

#' 2-O-methylation scores
#'
#' @format character
#'
"Nm_scores"

#' ac4C scores
#'
#' @format character
#'
"ac4C_scores"

#' m1A scores
#'
#' @format character
#'
"m1A_scores"

#' m7G scores
#'
#' @format character
#'
"m7G_scores"

#' m5C scores
#'
#' @format character
#'
"m5C_scores"

#' m3U scores
#'
#' @format character
#'
"m3U_scores"

#' Yeast STORM object
#'
#' Example STORM object derived from STORMseq data of yeast.
#'
#' @format list
#'
"yeast_STORM"

#' Yeast rRNA modifications reference
#'
#' rRNA modifications in yeast according to Taoka et al.,
#' 2016 (Nucleic acids research)
#'
#' @format data.frame
#'
"rRNAmods_Sc_Taoka"