detect_insertion: detect_insertion
In ScialdoneLab/MitoHEAR: Quantification of Mitochondrial DNA Heteroplasmy
View source: R/other_functions.R
detect_insertion R Documentation
detect_insertion
Description
detect_insertion
Usage
detect_insertion(ref_sequence, different_sequence, length_comparison = 10)
Arguments
ref_sequence
Character vector whose elements are the bases of a DNA
sequence to use as reference.
different_sequence
Character vector whose elements are the bases of a
DNA sequence different from the reference.
length_comparison
Integer number. Number of bases to consider for the
comparison between the two DNA sequences in order to detect and remove
insertions in the non-reference sequence.
Value
Character vector of the different_sequence with length equal to
ref_sequence, after having removed the insertions.
Author(s)
Gabriele Lubatti gabriele.lubatti@helmholtz-muenchen.de
ScialdoneLab/MitoHEAR documentation built on June 11, 2022, 7:18 a.m.
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View source: R/other_functions.R
| detect_insertion | R Documentation |
detect_insertion
Description
detect_insertion
Usage
detect_insertion(ref_sequence, different_sequence, length_comparison = 10)
Arguments
ref_sequence |
Character vector whose elements are the bases of a DNA sequence to use as reference. |
different_sequence |
Character vector whose elements are the bases of a DNA sequence different from the reference. |
length_comparison |
Integer number. Number of bases to consider for the comparison between the two DNA sequences in order to detect and remove insertions in the non-reference sequence. |
Value
Character vector of the different_sequence with length equal to ref_sequence, after having removed the insertions.
Author(s)
Gabriele Lubatti gabriele.lubatti@helmholtz-muenchen.de
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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