getDataFrame: Convert a storage object into a dataframe representation

In Sea2Data/Rstox: Running Stox functionality independently in R

Description

getDataFrame converts a StoX storage object into a dataframe, and is used by the more user friendly getDataFrame1 to convert a baseline object to dataframe.

getProcessDataTableAsDataFrame gets a joined table with meanNASC, psu, stratum, and area. Reads transect data, strata and area information from baseline Java object and merges them into one data frame.

Usage

getDataFrame(baseline, processName = NULL, functionName = NULL,
  level = NULL, drop = TRUE)

getDataFrame1(baseline, processName = NULL, functionName = NULL,
  level = NULL, drop = TRUE)

getDataFrameAtLevel(level, storage, data)

getProcessDataTableAsDataFrame(projectName, tableName)

Arguments

baseline	A StoX baseline object
processName	The name of the process to extract data by, such as "ReadBioticXML"
functionName	The name of the function to extract data by, such as "ReadBioticXML"
level	The level of tables for some datatypes like FishStation, which contains different levels, i.e., 1 for fishstation, 2 for sample and 3 for individuals. getDataFrame1 selects the first level, and getDataFrame must be used to select a different level
drop	Logical: if TRUE (defalut) drop the list if only one data frame is requested.
storage	The StoX storage object
data	The StoX data
projectName	The name or full path of the project, a baseline object (as returned from getBaseline() or runBaseline()), og a project object (as returned from open).
tableName	Supported processdata tables: TRAWLASSIGNMENT, DISTANCEASSIGNMENT, PSUASSIGNMENT, DISTANCEPSU, PSUSTRATUM, STRATUMPOLYGON

Value

A dataframe

Sea2Data/Rstox documentation built on May 14, 2019, 8:58 a.m.