API for Sea2Data/Rstox
Running Stox functionality independently in R

Global functions
JavaString2vector Man page Source code
NMDdecode Man page Source code
Rstox.init Man page Source code
abbrMatch Man page Source code
abbrevWords Man page Source code
addProcesses Man page Source code
aggPSUNASC Man page Source code
aggregateBySpeciesCategory Man page Source code
applyParlist Man page Source code
as.matrix_full Man page Source code
baseline2eca Man page Source code
bootstrapOneIteration Man page Source code
bootstrapParallel Man page Source code
checkNumPSUsInStratum Man page Source code
closeProject Man page Source code
createProject Man page Source code
data.frame2parString Man page Source code
distributeAbundance Man page Source code
downloadProjectZip Man page Source code
downloadXML Man page Source code
expandSeed Man page Source code
factorNAfirst Man page Source code
generateRScripts Man page Source code
geo2xy Man page Source code
getAvailableFunctions Man page Source code
getAvailableProjects Man page Source code
getBaseline Man page Source code
getBaselineParameters Man page Source code
getBioticAssignments Man page Source code
getBootstrapLevels Man page Source code
getBootstrapMethod Man page Source code
getDataFrame Man page Source code
getDataFrame1 Man page Source code
getDataFrameAtLevel Man page Source code
getFunsRstox Man page Source code
getJavaMemory Man page Source code
getMatrixList Man page Source code
getMultipolygon Man page Source code
getNASCDistr Man page Source code
getNMDdata Man page Source code
getNMDinfo Man page Source code
getPSUNASC Man page Source code
getParlist Man page Source code
getPlots Man page Source code
getPlottingUnit Man page Source code
getPrecisionLevel Man page Source code
getProcess Man page Source code
getProcessDataTableAsDataFrame Man page Source code
getProjString Man page Source code
getProject Man page Source code
getProjectData Man page Source code
getProjectDataEnv Man page Source code
getProjectPaths Man page Source code
getReports Man page Source code
getResampledNASCDistr Man page Source code
getRstoxDef Man page Source code
getRstoxEnv Man page Source code
getRstoxVersion Man page Source code
getSeedM Man page Source code
getSeedV Man page Source code
getSequenceToSampleFrom Man page Source code
getSpatial Man page Source code
getTransectFileName Man page Source code
getVar Man page Source code
getow Man page Source code
imputeByAge Man page Source code
initiateRstoxEnv Man page Source code
is.empty Man page Source code
isMatrixList Man page Source code
isMultipolygon Man page Source code
isProject Man page Source code
isSpatial Man page Source code
isURL Man page Source code
jBoolean Man page Source code
jDouble Man page Source code
jInt Man page Source code
linkPSU2Stratum Man page Source code
listOpenProjects Man page Source code
loadEnv Man page
loadProjectData Man page Source code
matchModeltype Man page Source code
matrix2multipolygon Man page
matrixList2multipolygon Man page Source code
matrixListLevel Man page Source code
modifyBaselineParameters Man page Source code
moveToTrash Man page Source code
multipolygon2matrix Man page
multipolygon2spatial Man page Source code
onAttach Source code
onLoad Source code
openProject Man page Source code
parString2data.frame Man page Source code
plotAbundance Man page Source code
plotAbundance_AcousticTrawl Man page
plotAbundance_SweptAreaTotal Man page Source code
plotNASCDistribution Man page Source code
plotStratum Man page Source code
pointToStoXFiles Man page Source code
polyArea Man page Source code
polyArea_test Man page Source code
projectMatrixList Man page Source code
rapplyKeepDataFrames Man page Source code
readBaselineFiles Man page Source code
readBaselineParameters Man page Source code
readBaselineParametersJava Man page Source code
readStrataPolygons Man page Source code
readXMLfiles Man page Source code
reopenProject Man page Source code
reportAbundance Man page Source code
reportAbundanceAtLevel Man page Source code
reportAbundance_AcousticTrawl Man page
reportAbundance_SweptAreaLength Man page Source code
reportAbundance_SweptAreaTotal Man page Source code
resetProject Man page Source code
runBaseline Man page Source code
runBootstrap Man page Source code
runBootstrap_1.6 Man page Source code
runBootstrap_AcousticTrawl Man page Source code
runBootstrap_SweptAreaLength Man page Source code
runBootstrap_SweptAreaTotal Man page Source code
runFunsRstox Man page Source code
sampleSorted Man page Source code
saveProject Man page Source code
saveProjectData Man page Source code
saveRImage Man page
saveasProject Man page Source code
searchNMDCruise Man page Source code
setAssignments Man page Source code
setBaselineParameters Man page Source code
setJavaMemory Man page Source code
setNASC Man page Source code
setPrecisionLevel Man page Source code
setProjectData Man page Source code
setSeedSingle Man page Source code
spatial2matrixList Man page Source code
surveyPlanner Man page Source code
updateProject Man page Source code
varianceEstimation Man page Source code
writeTransects Man page Source code
writeTransectsGPX Man page Source code
writeTransectsINFO Man page Source code
writeTransectsMaxSea Man page Source code
writeTransectsTRACK Man page Source code
wtd.strata.est Man page Source code
Sea2Data/Rstox documentation built on April 18, 2018, 11:11 p.m.