saveCatchMatrix: Save catch at age matrix

In Sea2Data/Rstox: Running Stox functionality independently in R

Description

Write catch at age predicted by eca.predict as csv file.

Usage

saveCatchMatrix(pred, filename, var = "Abundance", unit = "ones",
  main = "", savemeans = F)

Arguments

pred	as returned by eca.predict
filename	name of file to save to.
var	Variable to extract. Allows for Abundance, Count or Weight
unit	Unit for extracted variable. See getPlottingUnit
main	Title for the analysis, to be included as comment in saved file (e.g. species and year)
savemeans	If True, only means for each age group will be saved, otherwise extracted variable is saved for each iteration of the Monte Carlo simulation.

Details

Catch at age matrix is written as comma-separated file with quoted strings as row/column names. Each row correspond to an age group, and columns to either means or an iteration of the Monte Carlo simulation. Units are controlled by parameters, and written as metainformation in a preamble identified by the comment charater '#', along with any text provided in other arguments (parameter main).

Sea2Data/Rstox documentation built on May 14, 2019, 8:58 a.m.