Files in Sea2Data/Rstox
Running Stox functionality independently in R
DESCRIPTION
NAMESPACE
NEWS
R/RECA_format_checks.R
R/RECA_plots.R
R/onAttach.R
R/onLoad.R
R/pkgname.R
R/rstox_NMD.R
R/rstox_acoustic.r
R/rstox_base.r
R/rstox_boostrap.r
R/rstox_datras.R
R/rstox_eca.r
R/rstox_java.r
R/rstox_reports.r
R/rstox_spatial.r
R/rstox_xml.r
README
inst/extdata/Test_Rstox/input/acoustic/Echosounder-1618.xml
inst/extdata/Test_Rstox/input/acoustic/Echosounder-201605.xml
inst/extdata/Test_Rstox/input/acoustic/Echosounder-2016205.xml
inst/extdata/Test_Rstox/input/acoustic/Echosounder-2016857.xml
inst/extdata/Test_Rstox/input/acoustic/Echosounder-A6-2016.xml
inst/extdata/Test_Rstox/input/biotic/Biotic-1618.xml
inst/extdata/Test_Rstox/input/biotic/Biotic-201605.xml
inst/extdata/Test_Rstox/input/biotic/Biotic-2016205.xml
inst/extdata/Test_Rstox/input/biotic/Biotic-2016857.xml
inst/extdata/Test_Rstox/input/biotic/Biotic-A6-2016.xml
inst/extdata/Test_Rstox/process/project.xml
inst/extdata/xsd/acoustic/LUF20_v1.xsd
inst/extdata/xsd/biotic/biotic_v1.4.xsd
inst/extdata/xsd/biotic/biotic_v3.0.xsd
inst/java/stox.jar
man/JavaString2vector.Rd
man/NMDdecode.Rd
man/Rstox-package.Rd
man/Rstox.init.Rd
man/abbrMatch.Rd
man/abbrevWords.Rd
man/addProcesses.Rd
man/as.matrix_full.Rd
man/baseline2ECA.Rd
man/bootstrapOneIteration.Rd
man/bootstrapParallel.Rd
man/checkAgeLength.Rd
man/checkCovariateConsistency.Rd
man/checkLandings.Rd
man/checkWeightLength.Rd
man/check_columns_present.Rd
man/check_covariates.Rd
man/check_landings_cov.Rd
man/check_none_missing.Rd
man/createProject.Rd
man/data.frame2nestedList.Rd
man/data.frame2parString.Rd
man/diagnosticsCoverageRECA.Rd
man/diagnosticsRECA.Rd
man/diagnosticsSamplesRECA.Rd
man/diagnostics_model_configuration.Rd
man/distributeAbundance.Rd
man/downloadProjectZip.Rd
man/formatPlot.Rd
man/generateSpeciesMatrix.Rd
man/getAvailableFunctions.Rd
man/getBioticAssignments.Rd
man/getCovariateValue.Rd
man/getCovparam.Rd
man/getDataFrame.Rd
man/getDataMatrixANDCovariateMatrix.Rd
man/getGlobalParameters.Rd
man/getHardCoded.Rd
man/getInfo.Rd
man/getLandings.Rd
man/getLengthGivenAge_Biotic.Rd
man/getMidSeason.Rd
man/getMode.Rd
man/getNASCDistr.Rd
man/getNMDinfo.Rd
man/getPSUNASC.Rd
man/getParlist.Rd
man/getPlots.Rd
man/getPlottingUnit.Rd
man/getProcess.Rd
man/getProjString.Rd
man/getProjectPaths.Rd
man/getResampledNASCDistr.Rd
man/getRstoxEnv.Rd
man/getRstoxVersion.Rd
man/getVar.Rd
man/getWeightGivenLength_Biotic.Rd
man/get_eq_tail_ci.Rd
man/get_fixed_effects_landings.Rd
man/get_g_s_a_frame.Rd
man/get_gta_landings.Rd
man/getow.Rd
man/hasAgeInSample.Rd
man/imputeByAge.Rd
man/insertToProjectXML.Rd
man/isURL.Rd
man/jInt.Rd
man/linkPSU2Stratum.Rd
man/moveToTrash.Rd
man/papply.Rd
man/plotAbundance.Rd
man/plotNASCDistribution.Rd
man/plotRECA.Rd
man/plotRECAresults.Rd
man/plotSampleCompositionRECA.Rd
man/plotSamplingOverview.Rd
man/plot_RECA_results_panel.Rd
man/plot_catch_at_age_ci.Rd
man/plot_catch_fractions.Rd
man/plot_cell_coverage.Rd
man/plot_cell_landings.Rd
man/plot_ci.Rd
man/plot_fixed_effect_coverage.Rd
man/plot_gear_temporal_area.Rd
man/plot_length_at_age.Rd
man/plot_mission_types.Rd
man/plot_pred_box.Rd
man/plot_sample_types.Rd
man/plot_station_types.Rd
man/plot_weight_at_age.Rd
man/pointToStoXFiles.Rd
man/polyArea.Rd
man/prepareDATRAS.Rd
man/prepareRECA.Rd
man/readBaselineFiles.Rd
man/reportAbundance.Rd
man/reportRECA.Rd
man/rm.na.Rd
man/runBaseline.Rd
man/runBootstrap.Rd
man/runFunsRstox.Rd
man/runRECA.Rd
man/sampleSorted.Rd
man/saveCatchMatrix.Rd
man/searchNMDCruise.Rd
man/setAssignments.Rd
man/setBaselineParameters.Rd
man/setJavaMemory.Rd
man/setPrecisionLevel.Rd
man/setProjectData.Rd
man/splitBioticCC.Rd
man/splitPredCC.Rd
man/surveyPlanner.Rd
man/varianceEstimation.Rd
man/writeBioticXML.Rd
man/writeRecaConfiguration.Rd
man/writeTransects.Rd
man/wtd.strata.est.Rd
