Description Usage Arguments Value
This function is used in bootstrapParallel().
1 2 3 4 | bootstrapOneIteration(i, projectName, assignments, strataNames,
psuNASC = NULL, stratumNASC = NULL, resampledNASC = NULL,
startProcess = "TotalLengthDist", endProcess = "SuperIndAbundance",
seedV = NULL, sorted = TRUE, JavaMem = getRstoxDef("JavaMem"), ...)
|
i |
The boostrap iteration number. |
projectName |
The name or full path of the project, a baseline object (as returned from |
assignments |
Trawl assignment from baseline. |
strataNames |
The strata names of the survey. |
psuNASC |
MeanNASC from baseline. |
stratumNASC |
Strata NASC estimates from getNASCDistr(baseline). |
resampledNASC |
Resampled NASC distribution. |
startProcess |
The start process of the bootstrapping, being the first process before which biostations has been assigned and NASC values have been calculated. |
endProcess |
The end process of the bootstrapping, being the process returning a matrix containing the following columns: "Stratum", "Abundance", "weight", and grouping variables such as "age", "SpecCat", "sex". |
seedV |
A vector of seeds. seedV[i] is used. |
sorted |
Should the data be sorted prior to sampling? |
JavaMem |
The memory occupied by the Java virtual machine. Default is returned by getRstoxDef("JavaMem"). Reducing this may be usefull when using mutiple cores. |
list with (1) the abundance by length in the bootstrap run, (2) the abundance by super individuals in the bootstrap run
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