runRECA: run RECA
In Sea2Data/Rstox: Running Stox functionality independently in R

Description Usage Arguments Details

Loads data produced by prepareRECA, run tests on model configuration, runs parameterization and makes predictions using RECA. Saves results to project data 'runRECA'

runRECA(projectName, burnin = 100, caa.burnin = 100, nSamples = 1000,
  thin = 1, fitfile = "fit", predfile = "pred",
  lgamodel = "log-linear", CC = FALSE, CCError = FALSE,
  seed = NULL, age.error = FALSE, export_only = NULL)

`projectName`	name of stox project
`burnin`	see specification for GlobalParameters in `eca.estimate`
`caa.burnin`	see specification for GlobalParameters in `eca.predict`
`nSamples`	see specification for GlobalParameters in `eca.estimate`
`thin`	see specification for GlobalParameters in `eca.estimate`
`fitfile`	see specification for GlobalParameters in `eca.estimate`
`predfile`	see specification for GlobalParameters in `eca.predict`
`lgamodel`	see specification for GlobalParameters in `eca.estimate`
`CC`	see specification for GlobalParameters in `eca.estimate`
`CCError`	see specification for GlobalParameters in `eca.estimate`
`seed`	see specification for GlobalParameters in `eca.estimate`
`age.error`	see specification for GlobalParameters in `eca.estimate`
`export_only`	if not NULL this indicates that eca should not be run, but all parameters should be exported to the file export_only

Most parameters to this function are appended to the argument list produced by prepareRECA and passed as argument GlobalParameters to eca.estimate and eca.predict. For purposes of testing and running ECA detached from StoX, Data files accepted by codeeca.estimate and eca.predict can be exported using the option export_only. In this case the analysis is not run, but data files and parameter files are stored at the designated location.

Sea2Data/Rstox documentation built on May 14, 2019, 8:58 a.m.