SebastianSosa/ANTs
Animal Network Toolkit Software

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Man pages for SebastianSosa/ANTs
Animal Network Toolkit Software

antANT diagnostic for permuted statistics
assoc.gfiGeneralized affiliation index
assoc.indicesAssociation indices
assoc_matAssociation indexes
assoc_mat_fullAssociation indexes
assoc_mat_one_idAssociation indexes for one individual
check.dfData frame ANT check
check.idData frame ANT ID check
check.matMatrix ANT check
convert.socprogConverts Socprog data frame
df.col.findIdFinds a data frame index
df.createCreates an empty data frame or a list of empty data frames
df.create.singleCreates an empty data frame.
df.ctrlFactorCreates a column that merges multiple columns
df_mergeMerge two data frames
df_to_gbiGroup by individual matrix.
df.to.gbiData frame to GBI.
df.to.gbi.focalConverts a data frame of individual associations into a group...
df.to.matData frame to a matrix
edgl.to.grpDyadic data frame (edge list) to linear group by individual...
edgl_to_matrixEdge list to matrix
error_matrixErrors related to matrices
gbi_createEmptyEmpty group by individual matrix
gbi.to.dfGroup by individual matrix to linear data frame of...
grp.to.edglLinear group by individual data frame to dyadic data frame...
import.dfImports data frames
import.matImports matrices
laplacian_energy_degreesLaplacian energy.
ldf_mergeMerge list of data frames
listDf_merge_single_columnMerge columns of a List of data frames.
list_lapplyLapply function
list_to_dfList to data frame.
mat_binaryzationMatrix binarization.
mat.binaryzationMatrix binarization.
mat_cols_sumsFrom Column Sums.
mat_col_sumsBinaryBinary version of column sum.
mat_dimDimensions of a matrix
mat_filterMatrix filtering
mat_find0Find zeros in a Matrix.
mat_isSquareIs square.
mat.lpLaplacian matrix
mat_row_extractExtract matrix row.
mat_rows_sumsFrom row Sums.
mat_rows_sumsBinaryBinary version of row sum.
mat.symetrizeSymmetrizes matrix
mat.to.edglMatrix to edge list
mat.vectorizationMatrix vectorization
merge.metMerge data frame with metric
metANT Graphical User Interface (GUI)
met.affinityAffinity
met.affinity.singleAffinity
met.allAll node metrics
met.alterDegreeAlters sum or average of met.degree or met.strength.
met.assortativityAssortativity
met.assortativityCatAssortativity
met.assortatvityContinuousContinuous assortativity
met.betweennessBetweenness centrality
met.betweenness.singleBetweenness centrality
met.ciCentralisation index
met.ci.singleCentralisation index
met.coutTrianglesCalculates the number of triangles in a network
met.degreeDegree
met.degree.singleDegree on single matrix
met.densityDensity
met.dge.singleAverage Dyadic Efficiency
met.diameterDiameter
met.disparityDisparity
met.disparity.singleDisparity
met.eigenEigenvector Centrality
met.eigen.singleEigenvector Centrality
met.geGlobal efficiency
met.geodesicGeodesic distances
met.geodesicDiameter.singleGeodesic distances and diameter
met.ge.singleGlobal efficiency
met.indegreeIndegree
met.indegree.singleIndegree
met.instrengthInstrength
met.instrength.singleInstrength
met.lpLaplacian centrality
met.lpcBBinary symetric Laplacian centrality
met.lpcentEvcentLaplacian centrality
met.lpcWWheigthed symetric Laplacian centrality
met.lpEnergyEigenLaplacian energy.
met.lp.singleSymetric Laplacian centrality
met.outdegreeOutdegree
met.outdegree.singleOutdegree
met.outstrengthOutstrength
met.outstrength.singleOutstrength
met.reachReach centrality
met.reach.singleReach centrality
met.riR-Index
met.ri.singleR-Index
met_strengthstrength
met.strengthStrength
met.strength.singleStrength
nodeskMetricsANTs tcltk GUI code.
nodeskMetrics2Interpret ANT GUI output
perm_dataStream1Data Stream gambit of the group Permutations without control...
perm_dataStream1_focalData Stream gambit of the group Permutations without control...
perm_dataStream_ControlFactorData Stream gambit of the group Permutations with control...
perm.dataStream.focalConverts a data frame of individual associations into a group...
perm.dataStream.groupData stream permutation for association data
perm.ds.focalData stream permutation for focal sampling data .
perm.ds.grpData stream permutation for association data
perm.edglEdge list link permutations on an edgelist
perm_matVecVectorize matrix permutation
perm.met.degree.singleLink perm keeping structure on a single matrix
perm.net.degreeLink permutation keeping the structure
perm.net.links.singleMatrix edge permutations
perm.net.lkMatrix links permutations
perm.net.lk.wLinks weigths permutations
perm.net.nlNode label permutations with or without random factor(s)
perm.net.nl.strNodes labels permutation keeping network structure
perm.net.nl.str.singleNodes labels permutation keeping network structure
perm_net_weigthsEdgelist weigths permutations
perm.net.weigthsNetwork weigths permutation
perm_nl_rfNode lable permutation with random factors
perm.nodeLabelNode label permutations
perm_nodeLabelsNode label permutations.
perm.redoRepeats a permutation according to random factors
perm_vec_factorPermute factor vector.
perm_vec_intVector permutations.
post.distHistogram of posterior distribution
redo.ds.focal.cumFunction for cumulative permutations for symmetric behaviour...
redo.ds.focal.glmFocal Data stream Recursive function for error found in...
redo.ds.focal.glmmFocal Data stream Recursive function for error found in...
redo.ds.focal.lmFocal Data stream Recursive function for error found in...
redo.ds.grpgambit of the group data stream function for error found in...
redo_perm_dataStream_1Data Stream gambit of the group cumulative permutations...
redo_perm_dataStream1_focalData Stream gambit of the group Permutations without control...
redo_perm_dataStream_ControlFactorData Stream gambit of the group cumulative permutations with...
redo_perm_dataStream_ControlFactor_scdData Stream gambit of the group cumulative permutations with...
redo_perm_dataStream_focalData Stream Focal Sampling cumulative permutations without...
redo.perm.ds.grp.cumFunction for cumulative permutations on a data frame of...
redo.perm.ds.grp.cum.scdcumulative permutations on GBI or GBI with control factors
redo.perm.net.nl.strRedo Nodes labels permutation keeping network structure
sampling.effortSampling effort
sampling.robustnessMetric robustness
sampling.uncertaintyMetric uncertainty
sim.dfSimulated data frame
sim.focal.directedFocal sampling directed data
sim.focal.undirectedFocal sampling undirected data
sim.gbiGroup by individual (GBI) matrix
sim.gbi.attDyadic attributes for sim.gbi data
sim.grpSimulated data collected through gambit of the group sampling
sim.mSimulated Matrix of interactions
sim.socprogSimulated Socprog data format
stat.ciConfidence interval
stat.corCorrelation test on permuted data.
stat.deletionsNetwork target & random deletion simulations
stat.deletionsPlotPlot for network deletion simulations
stat.glmPermuted Generalized Linear Model
stat.glmmExtracts statistical measures of interest in Generalized...
stat.lmExtracts statistical measures of interest in Linear Model
stat.model.diagDiagnostic plot for lm, glm, lmer,glmer models
stat.pP-value
stat.tT-test on data frame
stat.tauKrMatrix TauKr correlations
stat.tauKrPartialPartial matrix TauKr correlations
stat.tauKrPartialPermSigPartial matrix TauKr correlations
stat.tauKrPermSigMatrix TauKr correlations
stat.tauKrSimpleMatrix TauKr correlations
tauSDTauKr standard deviation
time.heterogeneityCreate a matrix of time of observation per dyades
tobs_to_matControl heterogeneity of time of observation
vec_char_as_factorAs factor
vec_char_extract_IdValueExtract vector elements
vec_fillMerge
vec_intersectintersect
vec_levelsUniques
vec_lowertri_to_matVector to matrix lower triangle
vec_num_extract_IdValueExtract ID
vec_sampleVector sample
vec_sumSum
vec_to_matVector to matrix
vec_to_mat_add_diagVector to matrix and adding diag
vec_uniqueVector uniques
vec_vec_multiplyVectors multiply
vec_vec_sumVectors multiply
vis.histHistogram of posterior distribution
vis.netNetwork vizualisation
which_equalEqual
which.metricWhich metric to choose
which.protocolWhich metric to choose
SebastianSosa/ANTs documentation built on Sept. 25, 2023, 11:06 p.m.

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