align_alleles: Align allele sequences across loci
In ShawHahnLab/microsat: Computational, High-throughput Individual Identification through Microsatellite Profiling
View source: R/summarize_dataset.R
align_alleles R Documentation
Align allele sequences across loci
Description
Create a list of alignments across observed alleles, with one alignment per
locus present in the given summary, and by default one entry for each unique
sequence for each locus.
Usage
align_alleles(results_summary, derep = TRUE, ...)
Arguments
results_summary
cross-sample summary data frame.
derep
logical; should allele sequences be dereplicated prior to
alignment? TRUE by default.
...
additional arguments passed to msa::msa.
Value
list of MSA alignment objects, one per locus.
ShawHahnLab/microsat documentation built on Aug. 25, 2023, 11:16 p.m.
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View source: R/summarize_dataset.R
| align_alleles | R Documentation |
Align allele sequences across loci
Description
Create a list of alignments across observed alleles, with one alignment per locus present in the given summary, and by default one entry for each unique sequence for each locus.
Usage
align_alleles(results_summary, derep = TRUE, ...)
Arguments
results_summary |
cross-sample summary data frame. |
derep |
logical; should allele sequences be dereplicated prior to alignment? TRUE by default. |
... |
additional arguments passed to msa::msa. |
Value
list of MSA alignment objects, one per locus.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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