load_locus_attrs | R Documentation |
Load a comma-separated table of locus attributes to use for analysis. This is called automatically during full_analysis, with the data frame then used by analyze_seqs within analyze_dataset.
load_locus_attrs(fp_locus_attrs, ...)
fp_locus_attrs |
path to text file. |
... |
additional arguments passed to load_csv. |
Columns Required:
Locus
: Unique identifier for a given locus
LengthMin
: Minimum known allele sequence length for this locus
LengthMax
: Minimum known allele sequence length for this locus
LengthBuffer
: Additional sequence length below LengthMin
and above
LengthMax
to accept for a candidate allele
Primer
: The forward PCR primer sequence for a given locus, used when
matching sequences to loci
ReversePrimer
: The reverse PCR primer sequence
data frame of locus attributes
filename <- system.file("example_locus_attrs.csv", package = "chiimp")
locus_attrs <- load_locus_attrs(filename)
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