categorize_genotype_results: Categorize genotyping results
In ShawHahnLab/microsat: Computational, High-throughput Individual Identification through Microsatellite Profiling
categorize_genotype_results R Documentation
Categorize genotyping results
Description
For a given results summary data frame that has CorrectAllele1Seq and
CorrectAllele2Seq columns (such as produced by match_known_genotypes)
added, create a factor labeling every row of the input data frame by its
genotyping outcome.
Usage
categorize_genotype_results(results_summary)
Arguments
results_summary
cross-sample summary data frame as produced by
analyze_dataset with extra columns as produced by
match_known_genotypes.
Details
Levels in the returned factor, in order:
Correct: one/two alleles match.
Incorrect at least one allele does not match.
Blank: No alleles were called in the analysis even though known genotypes
were supplied.
Dropped Allele: One called allele is correct for a heterozygous individual,
but no second allele was called.
Cases that should not occur, such as CorrectAllele1Seq and
CorrectAllele2Seq both set to NA, map to NA in the returned factor.
Value
factor defining genotyping result category for every row of the input
data frame.
ShawHahnLab/microsat documentation built on Aug. 25, 2023, 11:16 p.m.
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| categorize_genotype_results | R Documentation |
Categorize genotyping results
Description
For a given results summary data frame that has CorrectAllele1Seq and
CorrectAllele2Seq columns (such as produced by match_known_genotypes)
added, create a factor labeling every row of the input data frame by its
genotyping outcome.
Usage
categorize_genotype_results(results_summary)
Arguments
results_summary |
cross-sample summary data frame as produced by analyze_dataset with extra columns as produced by match_known_genotypes. |
Details
Levels in the returned factor, in order:
Correct: one/two alleles match.
Incorrect at least one allele does not match.
Blank: No alleles were called in the analysis even though known genotypes were supplied.
Dropped Allele: One called allele is correct for a heterozygous individual, but no second allele was called.
Cases that should not occur, such as CorrectAllele1Seq and
CorrectAllele2Seq both set to NA, map to NA in the returned factor.
Value
factor defining genotyping result category for every row of the input data frame.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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