API for ShawHahnLab/microsat
Computational, High-throughput Individual Identification through Microsatellite Profiling

Global functions
align_alleles Man page Source code
allele_match Man page Source code
allelify Source code
analyze_dataset Man page Source code
analyze_sample Man page Source code
analyze_sample_guided Man page Source code
analyze_sample_naive Man page Source code
analyze_seqs Man page Source code
calc_genotype_distance Man page Source code
categorize_genotype_results Man page Source code
check_category Source code
check_length Man page Source code
check_motif Man page Source code
chiimp Man page
chiimp-package Man page
chunk_up Source code
config.defaults Man page
find_artifact Man page Source code
find_closest_matches Man page Source code
find_matching_primer Man page Source code
find_stutter Man page Source code
flatten_alleles Source code
format_pandoc_args Man page Source code
full_analysis Man page Source code
full_locus_match Man page Source code
get_px_width Man page Source code
histogram Man page Source code
k_group_rows Source code
k_row_spec Source code
kable_genotypes Source code
kable_idents Source code
load_allele_names Man page Source code
load_config Man page Source code
load_dataset Man page Source code
load_genotypes Man page Source code
load_locus_attrs Man page Source code
load_seqs Man page Source code
logmsg Man page Source code
main Man page Source code
make.dist_scale Source code
make_allele_name Man page Source code
make_dist_mat Man page Source code
make_dist_mat_known Man page Source code
make_entry_id Man page Source code
make_rownames Man page Source code
match_known_genotypes Man page Source code
name_alleles_in_table Man page Source code
name_known_sequences Man page Source code
normalize_alleles Source code
order_alleles Source code
order_entries Man page Source code
plot_alignment Man page Source code
plot_cts_per_locus Man page Source code
plot_dist_mat Man page Source code
plot_heatmap Man page Source code
plot_heatmap_artifacts Man page Source code
plot_heatmap_homozygous Man page Source code
plot_heatmap_prominent_seqs Man page Source code
plot_heatmap_proportions Man page Source code
plot_heatmap_stutter Man page Source code
prepare_dataset Man page Source code
remove_shared_root_dir Man page Source code
render_report Man page Source code
report_genotypes Man page Source code
report_idents Man page Source code
rmd_alignments Source code
rmd_kable_genotypes Source code
rmd_kable_idents Source code
rmd_plot_cts_per_locus Source code
sample_analysis_funcs Man page
sample_summary_funcs Man page
save_alignment_images Man page Source code
save_alignments Man page Source code
save_allele_seqs Man page Source code
save_data Man page Source code
save_dataset Man page Source code
save_dist_mat Man page Source code
save_histograms Man page Source code
save_results_summary Man page Source code
save_sample_data Man page Source code
save_seqfile_data Man page Source code
sort_results Man page Source code
str_hist_render Man page Source code
str_hist_setup Man page Source code
str_hist_setup_legend Man page Source code
summarize_attribute Man page Source code
summarize_dataset Man page Source code
summarize_genotypes Man page Source code
summarize_genotypes_known Man page Source code
summarize_sample Man page Source code
summarize_sample_guided Man page Source code
tabulate_allele_names Man page Source code
tally_cts_per_locus Man page Source code
tidy_analyzed_dataset Man page Source code
ShawHahnLab/microsat documentation built on July 26, 2018, 7:42 a.m.