read_advise_lipidomics: read_advise_lipidomics

In ShinyFabio/ADViSELipidomics: Shinyapp for the acquisition and the analysis of lipidomics data

read_advise_lipidomics

Description

read_advise_lipidomics is the function for reading and storing data produced by LipidSearch, and to be analyzed with ADViSELipidomics pipeline.

Usage

read_advise_lipidomics(out, datapath, data_type = "LipidSearch", target_file)

Arguments

out	List. It is the result from the init_advise_lipidomics function.
datapath	Character. Path for the folder containing the data files.
data_type	Character string. The data type to read. Can be "LipidSearch" or "Liquid". By default "LipidSearch".
target_file	Dataframe. It should be the target file already stored in the list 'out' (as out$targets$targetfile_lipidomics).

Details

The reading step reads and stores samples data (created by LipidSearch software), checking if all the files listed in the target file are present in the suitable folder.

Value

res: a list with result from the initialization step, updated with the data to be analyzed with the forthcoming steps.

Note

Last change 17/12/2021

ShinyFabio/ADViSELipidomics documentation built on March 21, 2023, 7:30 a.m.