workbench_advise_lipidomics: workbench_advise_lipidomics

In ShinyFabio/ADViSELipidomics: Shinyapp for the acquisition and the analysis of lipidomics data

workbench_advise_lipidomics

Description

workbench_advise_lipidomics is the function for the creation of the SummarizedExperiment object from a Metabolomics Workbench output.

Usage

workbench_advise_lipidomics(filtered, coldata, metadata, data_type, id)

Arguments

filtered	List. It is the result from the na_advise_lipidomics function.
coldata	the colData object from the Metabolomics Workbench output.
metadata	metadata to be saved in the final summarized experiment.
data_type	information about the data type (Area, Concentration, Peak Heigth...).
id	the id of the selected metabolomics workbench experiment .

Details

This function take the filtered matrix (assay), the target file (coldata) and the metadata to build a SummarizedExperiment. The rowData of the SumExp is also builded.

Value

res: a list with two SummerizedExperiment

Note

Last change 28/12/2021

ShinyFabio/ADViSELipidomics documentation built on March 21, 2023, 7:30 a.m.