get_pm: utilities for extracting statistics

In ShotaNishijima/frasam: Fisheries Research Agency (FRA) provides an R package for analyzing the State-space Assessment Model (SAM)

utilities for extracting statistics

Usage

get_pm(
  res_sam,
  res_future = NULL,
  waa_catch = res_sam$input$dat$waa,
  last_year = 2022,
  waa_biom = res_sam$input$dat$waa,
  year_biol = 2020:2022,
  year_Fcur = 2020:2022,
  perSPR = c(30, 40, 50, 60, 70)
)

Arguments

res_sam	result of sam function
res_future	result of future projection
waa_catch	weight at age for calculating total catch weight. This matrix should be given because SAM doesn't use this biological parameters
last_year	last year of stock assessment
waa_biom	weight at age for calculating biomass weight. If this is not given, sam_res$input$dat$waa is automatically used
year_biol	year range to derive biological parameters. Biological parameters are averaged by age during the given period
year_Fcur	year range to derive F at age considred as F current. Fs at age are averaged by age during the given period
perSPR	percent SPR (

utilities for extracting statistics \donotrun res_pm_all <- purrr::map_dfr(basecase_list, function(x) get_pm(x, NULL, waa_catch=x$input$dat$waa), .id="id") %>% pivot_wider(values_from=value, names_from=stat)

ShotaNishijima/frasam documentation built on Sept. 9, 2024, 8:43 p.m.