API for Siggers-Lab/hTF_array
Process and Visualize CoRec Data
| Global functions | |
|---|---|
| %>% | Man page |
| CoRecMotif | Man page Source code |
| CoRecMotif-class | Man page |
| accessors | Man page |
| annotate_fluorescence_table | Man page Source code |
| as.data.frame,CoRecMotif-method | Man page |
| calculate_beta | Source code |
| calculate_rolling_ic | Source code |
| calculate_strength | Source code |
| check_colnames | Source code |
| check_corecmotif_list | Source code |
| check_replicates | Man page Source code |
| check_valid_zscore_motif | Source code |
| compare_conditions | Man page Source code |
| create_array_id | Source code |
| example_annotated_fluorescence_table | Man page |
| example_corecmotifs | Man page |
| example_fluorescence_table | Man page |
| example_matched_corecmotifs | Man page |
| example_zscore_table | Man page |
| filter_corecmotifs | Man page Source code |
| find_match | Man page Source code |
| find_seed_zscore | Source code |
| fluorescence_to_zscore_table | Man page Source code |
| get_array_id | Man page Source code |
| get_beta | Man page Source code |
| get_delta_zscore_motif | Man page Source code |
| get_icm | Man page Source code |
| get_match_altname | Man page Source code |
| get_match_cluster | Man page Source code |
| get_match_icm | Man page Source code |
| get_match_motif | Man page Source code |
| get_match_name | Man page Source code |
| get_match_ppm | Man page Source code |
| get_match_pvalue | Man page Source code |
| get_match_pwm | Man page Source code |
| get_motif | Man page Source code |
| get_motif_name | Man page Source code |
| get_motif_strength | Man page Source code |
| get_pbm_condition | Man page Source code |
| get_ppm | Man page Source code |
| get_probe_set | Man page Source code |
| get_pwm | Man page Source code |
| get_rolling_ic | Man page Source code |
| get_seed_sequence | Man page Source code |
| get_seed_zscore | Man page Source code |
| get_zscore_motif | Man page Source code |
| hTF_v1_annotation | Man page |
| load_fluorescence_data | Man page Source code |
| make_corecmotifs | Man page Source code |
| make_zscore_motif | Man page Source code |
| motif_clusters | Man page |
| plot_corecmotif | Man page Source code |
| process_corecmotifs | Man page Source code |
| set_array_id | Man page Source code |
| set_motif_name | Man page Source code |
| set_pbm_condition | Man page Source code |
| set_probe_set | Man page Source code |
| set_seed_sequence | Man page Source code |
| set_zscore_motif | Man page Source code |
| show,CoRecMotif-method | Man page |
| sum_negatives | Source code |
| sum_positives | Source code |
| summarize_corecmotifs | Man page Source code |
| try_catch_save_output | Source code |
| update_cluster_match | Man page Source code |
| update_corecmotif | Man page Source code |
| update_output_base_name | Source code |
| zscore_table_to_corecmotifs | Man page Source code |
| zscore_to_universalmotif | Source code |
