accessors: Access or replace data from CoRecMotifs
In Siggers-Lab/hTF_array: Process and Visualize CoRec Data

accessors

R Documentation

Access or replace data from CoRecMotifs

Description

Extracts or replaces data stored in CoRecMotifs.

Usage

get_probe_set(corecmotif)

get_pbm_condition(corecmotif)

get_zscore_motif(corecmotif)

get_delta_zscore_motif(corecmotif)

get_array_id(corecmotif)

get_motif_strength(corecmotif)

get_rolling_ic(corecmotif)

get_seed_zscore(corecmotif)

get_seed_sequence(corecmotif)

get_beta(corecmotif)

get_motif(corecmotif)

get_motif_name(corecmotif)

get_icm(corecmotif)

get_pwm(corecmotif)

get_ppm(corecmotif)

get_match_motif(corecmotif)

get_match_name(corecmotif)

get_match_altname(corecmotif)

get_match_icm(corecmotif, correct_orientation = TRUE)

get_match_pwm(corecmotif, correct_orientation = TRUE)

get_match_ppm(corecmotif, correct_orientation = TRUE)

get_match_pvalue(corecmotif)

get_match_cluster(corecmotif)

set_probe_set(corecmotif, value)

set_pbm_condition(corecmotif, value)

set_zscore_motif(corecmotif, value)

set_array_id(corecmotif, value)

set_seed_sequence(corecmotif, value)

set_motif_name(corecmotif, value)

Arguments

`corecmotif`	CoRecMotif. The motif whose slots should be accessed or replaced.
`correct_orientation`	`logical(1)`. Should the reference motif be reversed if necessary to match the CoRecMotif's orientation? (Default: TRUE)
`value`	Object to replace the slot with. The required type depends on which slot is being replaced. See CoRecMotif for more information on the expected classes.