compare_conditions: Compare CoRecMotifs across different PBM conditions

In Siggers-Lab/hTF_array: Process and Visualize CoRec Data

Compare CoRecMotifs across different PBM conditions

Description

Compares the CoRecMotifs in each PBM condition to the CoRecMotifs from the same probe set in all the other PBM conditions.

Usage

compare_conditions(
  corecmotifs,
  pbm_conditions,
  group_name = NULL,
  eucl_distance = 0.25,
  check_corecmotifs = TRUE
)

Arguments

corecmotifs	list. The CoRecMotifs to compare to each other.
pbm_conditions	character. The names of the individual PBM conditions to compare.
group_name	character(1) or NULL. The name of the group of PBM conditions to compare. This name will be combined with the probe set ID and a number to identify groups of motifs that are similar across conditions. (Default: NULL)
eucl_distance	numeric(1). The maximum allowable Euclidean distance between conditions to group. (Default: 0.4)
check_corecmotifs	logical(1). Should corecmotifs be checked for validity? Setting this to FALSE can increase speed, but if corecmotifs contains anything other than valid CoRecMotifs, it may produce uninformative error messages. (Default: TRUE)

Value

A data frame with comparison information about a list of CoRecMotifs.

Examples

print("FILL THIS IN")

Siggers-Lab/hTF_array documentation built on Feb. 7, 2024, 11:25 p.m.