make_zscore_motif: Create a z-score motif

In Siggers-Lab/hTF_array: Process and Visualize CoRec Data

Create a z-score motif

Description

Creates a z-score motif for a given probe set and PBM condition. The rows correspond to nucleotides and the columns correspond to positions in the motif.

Usage

make_zscore_motif(zscore_table, probe_set_name, pbm_condition)

Arguments

zscore_table	data.frame. An annotated table of fluorescence z-scores. See hTF_v1_annotation for expected annotation columns.
probe_set_name	character(1). The name of the probe set to use.
pbm_condition	character(1). The name of the PBM condition to use.

Value

A matrix with rows corresponding to nucleotides and columns corresponding to positions in the motif. Each cell is filled with the PBM condition-specific z-score of the probe with that nucleotide at that position.

Examples

print("FILL THIS IN")

Siggers-Lab/hTF_array documentation built on Feb. 7, 2024, 11:25 p.m.