Files in Siggers-Lab/hTF_array
Process and Visualize CoRec Data
.Rbuildignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/00_run_full_analysis.R
R/01_load_fluorescence_data.R
R/02_annotate_fluorescence_table.R
R/03_fluorescence_to_zscore_table.R
R/04_zscore_table_to_corecmotifs.R
R/05_filter_corecmotifs.R
R/06_check_replicates.R
R/07_find_match.R
R/CoRecMotif-class.R
R/CoRecMotif-methods.R
R/compare_conditions.R
R/data.R
R/plot_corecmotif.R
R/utils-internal.R
R/utils-pipe.R
R/utils.R
README.md
data/example_annotated_fluorescence_table.rda
data/example_corecmotifs.rda
data/example_fluorescence_table.rda
data/example_matched_corecmotifs.rda
data/example_zscore_table.rda
data/hTF_v1_annotation.rda
data/motif_clusters.rda
inst/extdata/Homo_sapiens_JASPAR2022_CORE_filtered.meme
inst/extdata/example_fluorescence_data_1.dat
inst/extdata/example_fluorescence_data_2.dat
man/CoRecMotif-class.Rd
man/CoRecMotif.Rd
man/accessors.Rd
man/annotate_fluorescence_table.Rd
man/check_replicates.Rd
man/compare_conditions.Rd
man/example_corecmotifs.Rd
man/example_fluorescence_tables.Rd
man/filter_corecmotifs.Rd
man/find_match.Rd
man/fluorescence_to_zscore_table.Rd
man/hTF_v1_annotation.Rd
man/load_fluorescence_data.Rd
man/make_corecmotifs.Rd
man/make_zscore_motif.Rd
man/motif_clusters.Rd
man/pipe.Rd
man/plot_corecmotif.Rd
man/process_corecmotifs.Rd
man/summarize_corecmotifs.Rd
man/update_cluster_match.Rd
man/update_corecmotif.Rd
man/zscore_table_to_corecmotifs.Rd
tests/testthat.R
tests/testthat/test-01_load_fluorescence_data.R
tests/testthat/test-02_annotate_fluorescence_table.R
tests/testthat/test-03_fluorescence_to_zscore_table.R
tests/testthat/test-04_zscore_table_to_corecmotifs.R
tests/testthat/test-05_filter_corecmotifs.R
tests/testthat/test-06_check_replicates.R
tests/testthat/test-07_find_match.R
tests/testthat/test-CoRecMotif-class.R
tests/testthat/test-CoRecMotif-methods.R
tests/testthat/test-plot_corecmotif.R
tests/testthat/test-utils-internal.R
tests/testthat/test-utils.R
vignettes/CoRec.Rmd
vignettes/hTF_array_design.Rmd
vignettes/matched_corecmotifs.rda
