GetSegmentations: Imports a set of genome segmentation files, particularly...
In Simon-Coetzee/funcivar: Calculate overlaps and enrichment between genomic variants and genomic features or segmentations
Description
Usage
Arguments
Value
Description
Imports a set of genome segmentation files, particularly those generated by
StatePaintR, for the purpose of annotating variants
Usage
1
Arguments
files
A character vector containing a list of files to import. These
files need to be BED9 format. see
https://genome.ucsc.edu/FAQ/FAQformat.html#format1. And they need to
be completely disjoint intervals.
genome
A character vector describing the genome build against which
the segmentations were created, e.g. "hg19", "b37", "hg38", "mm10".
Value
A GRangesList containing the segmentations imported.
Simon-Coetzee/funcivar documentation built on Aug. 2, 2021, 9:55 a.m.
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Description Usage Arguments Value
Description
Imports a set of genome segmentation files, particularly those generated by StatePaintR, for the purpose of annotating variants
Usage
1 |
Arguments
files |
A character vector containing a list of files to import. These files need to be BED9 format. see https://genome.ucsc.edu/FAQ/FAQformat.html#format1. And they need to be completely disjoint intervals. |
genome |
A character vector describing the genome build against which the segmentations were created, e.g. "hg19", "b37", "hg38", "mm10". |
Value
A GRangesList containing the segmentations imported.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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