PlotEnrichment: Plot Enrichment

In Simon-Coetzee/funcivar: Calculate overlaps and enrichment between genomic variants and genomic features or segmentations

Description

a flexible plotting tool of the enrichment data.frame generated by CalculateEnrichment()

Usage

PlotEnrichment(variant.enrichment, value = "difference", block1 = NULL,
  block2 = NULL, color.by = NULL, colors = NULL, ncol = 1)

Arguments

variant.enrichment	a data.frame of enrichment data generated by CalculateEnrichment()
value	one of 'difference' or 'oddsratio', thereby plotting the difference in beta distributions between foreground and background, or the oddsratio of the comparison.
block1	character string defining the column of variant.enrichment to be used as a factor by which to separate the enrichment into blocks (separate panels) in the plot. Default is NULL, in which case there is no blocking.
block2	character string defining the column of variant.enrichment to be used as a factor by which to separate the enrichment into blocks (separate panels) in the plot. Default is NULL, in which case there is no blocking.
color.by	optional character string defining the column of variant.enrichment to be used to color the values. If this column has hex color values, in the format #ff0000 they will be used.
colors	optional character vector defining the colors to use for each value. Must be the same length as the the number of rows in the variante.enrichment data.frame.
ncol	number of columns to use for facet_wrap if only one block is defined.

Value

a ggplot plot object

Simon-Coetzee/funcivar documentation built on Aug. 2, 2021, 9:55 a.m.