Simon-Coetzee/funcivar: Calculate overlaps and enrichment between genomic variants and genomic features or segmentations

Calculate overlaps and enrichment between genomic variants and genomic features or segmentations. This is done with both a beta binomial test for enrichment and fisher's exact test to generate odds ratios.

Getting started

Package details

AuthorSimon Coetzee
Bioconductor views LinkageDisequilibrium VariantAnnotation Visualization
MaintainerSimon Coetzee <[email protected]>
LicenseGPL-3 + file LICENSE
Version0.1.6
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Simon-Coetzee/funcivar")
Simon-Coetzee/funcivar documentation built on Nov. 16, 2018, 11:30 p.m.