SetOverlaps: Assign variants to features
In Simon-Coetzee/funcivar: Calculate overlaps and enrichment between genomic variants and genomic features or segmentations
Description
Usage
Arguments
Value
Description
Assign variants to features
Usage
1
SetOverlaps(variants, features)
Arguments
variants
a VCF or GRanges object representing variants to annotate
features
a GRanges or GRangesList object representing features used to
annotate variants.
Value
returns the variants object that was passed as an argument, VCF
objects have overlaps stored in rowRanges(), GRanges have overlaps stored
in mcols(), ShowOverlaps() can be used to reveal this data.
Simon-Coetzee/funcivar documentation built on Aug. 2, 2021, 9:55 a.m.
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Description Usage Arguments Value
Description
Assign variants to features
Usage
1 | SetOverlaps(variants, features)
|
Arguments
variants |
a VCF or GRanges object representing variants to annotate |
features |
a GRanges or GRangesList object representing features used to annotate variants. |
Value
returns the variants object that was passed as an argument, VCF objects have overlaps stored in rowRanges(), GRanges have overlaps stored in mcols(), ShowOverlaps() can be used to reveal this data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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