Man pages for SimonSchafferer/RNASeqUtility
ncRNA RNA-Seq analysis utilities
| calcNormReadCountCoverage | Calculate Normalized Read Count Coverage |
| clusterMultiMappingReads_stringent | Clustering of contigs |
| clusterMultiMappingReads_stringent_deprecated | Deprecated version of clustering |
| createSizeSelectedEnsemblncRNADB | Generate ncRNA database for rnastarMapping |
| extractRandomReadSet | Randomly extract reads from fastq |
| fetchNcRNAMappingSeq | Fetch sequences from ncRNAmapping |
| generateCountFromMappingDF | Generate Count table |
| generateCountUnclusteredTable | Helper method for clustering in MappAssClust_ncRNA_Template.R... |
| generateCoverageDF_contigs | Generate coverage data frame for specific candidates |
| generateCoverageDF_ncRNAmappings | Generate coverage data frame for specific candidates |
| RNASeqUtility-package | What the package does (short line) ~~ package title ~~ |
| splitReadCountCoveragePerCondition | Splits coverage list per condition |
| summarizeContigAnnotation | Summarize contig Annotation |
