splitReadCountCoveragePerCondition: Splits coverage list per condition
In SimonSchafferer/RNASeqUtility: ncRNA RNA-Seq analysis utilities
Description
Usage
Arguments
Value
Description
Splits the list obtained by calcReadCountCoveragePerCondition/generateCoverageDF_contigs by condition and calculates the mean read coverage per condition
Usage
1
splitReadCountCoveragePerCondition(coverageL, deseqds, samplesInfo)
Arguments
coverageL
output of calcReadCountCoveragePerCondition/generateCoverageDF_contigs
deseqds
DESeq object of the current data
samplesInfo
describing the experiment (produced by configuration template)
Value
data.frame containing the normalized read counts for each position in order to create a histogram of read counts for each ncRNA
SimonSchafferer/RNASeqUtility documentation built on May 9, 2019, 1:34 p.m.
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Description Usage Arguments Value
Description
Splits the list obtained by calcReadCountCoveragePerCondition/generateCoverageDF_contigs by condition and calculates the mean read coverage per condition
Usage
1 | splitReadCountCoveragePerCondition(coverageL, deseqds, samplesInfo)
|
Arguments
coverageL |
output of calcReadCountCoveragePerCondition/generateCoverageDF_contigs |
deseqds |
DESeq object of the current data |
samplesInfo |
describing the experiment (produced by configuration template) |
Value
data.frame containing the normalized read counts for each position in order to create a histogram of read counts for each ncRNA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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