generateCountUnclusteredTable: Helper method for clustering in MappAssClust_ncRNA_Template.R...

In SimonSchafferer/RNASeqUtility: ncRNA RNA-Seq analysis utilities

Description

Not intended for general use, just a helper method for MappAssClust_ncRNA_Template.R The method will merge the contig file generated from multiIntersect perl script with all the contigs that have been intersected with -wb option to the multiIntersected file and merged afterwards. Please see MappAssClust_ncRNA_Template.R, default inputs: multiIntersectBed_perl_CLI_cmdRes, mergeBedFile_CLI_cmdResL

Usage

generateCountUnclusteredTable(contigFile, sampleBedFiles)

Arguments

contigFile	CmdResult object is needed as input
sampleBedFiles	CmdResult object is needed as input

Value

data.frame (Unclustered)

SimonSchafferer/RNASeqUtility documentation built on May 9, 2019, 1:34 p.m.