Files in SimonSchafferer/RNASeqUtility
ncRNA RNA-Seq analysis utilities
.Rbuildignore
.gitignore
DESCRIPTION
DESCRIPTION~
LICENSE
NAMESPACE
R/RNASeqUtility.R
README.md
RNASeqUtility.Rproj
Read-and-delete-me
Supplemental_Figure_S1.png
data/EliminateNewLinesFasta.py
data/FilterFastaByMaxLength.pl
data/PreparencRNAfasta.py
demo/.Rhistory
demo/SubsetDataForSampleAnalysis.R~
demo/TemplateAnalysis.R~
inst/RNASeqAnalysisTemplates/small_ncRNA_analysis/Annotate_ncRNA_Template.R
inst/RNASeqAnalysisTemplates/small_ncRNA_analysis/Configuration_ncRNA_Template.R
inst/RNASeqAnalysisTemplates/small_ncRNA_analysis/DiffExp_RmdToHTML_Template.R
inst/RNASeqAnalysisTemplates/small_ncRNA_analysis/DiffExp_ncRNA_Template.Rmd
inst/RNASeqAnalysisTemplates/small_ncRNA_analysis/MappAssClust_ncRNA_Template.R
inst/RNASeqAnalysisTemplates/small_ncRNA_analysis/README
inst/RNASeqAnalysisTemplates/small_ncRNA_analysis/ReadCoverageAnalysis_Template.R
inst/RNASeqAnalysisTemplates/small_ncRNA_analysis/ReadCoverageAnalysis_Template.R~
inst/RNASeqAnalysisTemplates/small_ncRNA_analysis/executeRNASeqRScripts
inst/RNASeqAnalysisTemplates/small_ncRNA_analysis/samplesInfo_Template.csv
inst/RNASeqAnalysisTemplates/small_ncRNA_analysis_deprecated.zip
inst/RNASeqUI/pipelineCode/1_Cutadapt.R
inst/RNASeqUI/pipelineCode/2_MappingNCRNA.R
inst/RNASeqUI/pipelineCode/3_MappingToGenome.R
inst/RNASeqUI/pipelineCode/4_AssemblyClustering.R
inst/RNASeqUI/pipelineCode/5_Annotation.R
inst/RNASeqUI/pipelineCode/6_DiffExp.R
inst/RNASeqUI/pipelineCode/DiffExp_ncRNA_Template.Rmd
inst/RNASeqUI/server.R
inst/RNASeqUI/tabPanels/ConfigurationPageUI.R
inst/RNASeqUI/tabPanels/RunPage.R
inst/RNASeqUI/ui.R
man/RNASeqUtility-package.Rd
man/calcNormReadCountCoverage.Rd
man/clusterMultiMappingReads_stringent.Rd
man/clusterMultiMappingReads_stringent_deprecated.Rd
man/createSizeSelectedEnsemblncRNADB.Rd
man/extractRandomReadSet.Rd
man/fetchNcRNAMappingSeq.Rd
man/generateCountFromMappingDF.Rd
man/generateCountUnclusteredTable.Rd
man/generateCoverageDF_contigs.Rd
man/generateCoverageDF_ncRNAmappings.Rd
man/splitReadCountCoveragePerCondition.Rd
man/summarizeContigAnnotation.Rd
