inst/RNASeqAnalysisTemplates/small_ncRNA_analysis/DiffExp_RmdToHTML_Template.R
In SimonSchafferer/RNASeqUtility: ncRNA RNA-Seq analysis utilities
#Need to be started in the rootDir and
load("Configuration.rda")
load("Annotation.rda")
setwd(rootDir)
fileToKnit = list.files(getwd(), pattern=".Rmd$")
file.copy(file.path(rootDir, fileToKnit), file.path(diffExpDir, fileToKnit) )
library(knitr)
setwd(diffExpDir)
knit2html(input=fileToKnit,output=paste0(sub(".Rmd","",fileToKnit),"_REPORT"), spin(knit = FALSE), force_v1 = TRUE)
SimonSchafferer/RNASeqUtility documentation built on May 9, 2019, 1:34 p.m.
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#Need to be started in the rootDir and
load("Configuration.rda")
load("Annotation.rda")
setwd(rootDir)
fileToKnit = list.files(getwd(), pattern=".Rmd$")
file.copy(file.path(rootDir, fileToKnit), file.path(diffExpDir, fileToKnit) )
library(knitr)
setwd(diffExpDir)
knit2html(input=fileToKnit,output=paste0(sub(".Rmd","",fileToKnit),"_REPORT"), spin(knit = FALSE), force_v1 = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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