generateCoverageDF_ncRNAmappings: Generate coverage data frame for specific candidates

In SimonSchafferer/RNASeqUtility: ncRNA RNA-Seq analysis utilities

Description

This method returns a data frame containing coverage values for each position. It is intended for ncRNAmapping results. For contigs please see: generateCoverageDF_contigs

Usage

generateCoverageDF_ncRNAmappings(ncRNAMappingsDF, bedgraphMapping_plusL,
  bedgraphMapping_minusL, sampleNames)

Arguments

ncRNAMappingsDF	Selected candidates from the result of differential expression analysis from DESeq2 combined with the minimum annotation dataframe
bedgraphMapping_plusL	the cmdResult object of the bedgraph plus mapping (genomeCovNcRNAMapping_plusL)
bedgraphMapping_minusL	the cmdResult object of the bedgraph minus mapping (genomeCovNcRNAMapping_minusL)
sampleNames	names of the samples from samplesInfo table

Value

data.frame containing the read counts for each position in order to create a histogram of read counts for each ncRNA

SimonSchafferer/RNASeqUtility documentation built on May 9, 2019, 1:34 p.m.