Description Usage Arguments Value
compares sequences from the microarray with sequences of the RNA-Seq run and returns the best matching sequences
1 2 | compareChipInRNASeq(oligoTableIDs, rnaSeqResultSeqs, type = "local-global",
...)
|
oligoTableIDs |
e-numbers of the microarray results that need to be investigated |
... |
further arguments to pairwiseAlignment method |
character |
vector or DNAStringSet of the RNA-Seq contigs/ncRNAs |
character |
vector of mapping type for pairwiseAlignment method (default: local-global means local in the RNA-Seq and global oligo) |
data.frame with the closest match to each sequence
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