compareChipInRNASeq: Compare selected ncRNAs from the chip with RNA-Seq results

In SimonSchafferer/Utilities: What the package does (short line)

Description

compares sequences from the microarray with sequences of the RNA-Seq run and returns the best matching sequences

Usage

compareChipInRNASeq(oligoTableIDs, rnaSeqResultSeqs, type = "local-global",
  ...)

Arguments

oligoTableIDs	e-numbers of the microarray results that need to be investigated
...	further arguments to pairwiseAlignment method
character	vector or DNAStringSet of the RNA-Seq contigs/ncRNAs
character	vector of mapping type for pairwiseAlignment method (default: local-global means local in the RNA-Seq and global oligo)

Value

data.frame with the closest match to each sequence

SimonSchafferer/Utilities documentation built on May 9, 2019, 1:34 p.m.