Description Usage Arguments Value
compares sequences to the oligonucleotide sequence (reverseComplement of oligo)
1 | compareRNASeqInChip(rnaSeqCandidateSequences, type = "global-local", ...)
|
... |
further arguments to pairwiseAlignment method |
character |
vector of sequences to be analysed |
character |
vector of mapping type for pairwiseAlignment method (default: global-local means global oligo and local in the RNA-Seq) |
data.frame with the closest match to each sequence
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