compareRNASeqInChip: Compare sequences to chip oligos

Description Usage Arguments Value

Description

compares sequences to the oligonucleotide sequence (reverseComplement of oligo)

Usage

1
compareRNASeqInChip(rnaSeqCandidateSequences, type = "global-local", ...)

Arguments

...

further arguments to pairwiseAlignment method

character

vector of sequences to be analysed

character

vector of mapping type for pairwiseAlignment method (default: global-local means global oligo and local in the RNA-Seq)

Value

data.frame with the closest match to each sequence


SimonSchafferer/Utilities documentation built on May 9, 2019, 1:34 p.m.