compareRNASeqInChip: Compare sequences to chip oligos
In SimonSchafferer/Utilities: What the package does (short line)
Description
Usage
Arguments
Value
Description
compares sequences to the oligonucleotide sequence (reverseComplement of oligo)
Usage
1
compareRNASeqInChip(rnaSeqCandidateSequences, type = "global-local", ...)
Arguments
...
further arguments to pairwiseAlignment method
character
vector of sequences to be analysed
character
vector of mapping type for pairwiseAlignment method (default: global-local means global oligo and local in the RNA-Seq)
Value
data.frame with the closest match to each sequence
SimonSchafferer/Utilities documentation built on May 9, 2019, 1:34 p.m.
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Description Usage Arguments Value
Description
compares sequences to the oligonucleotide sequence (reverseComplement of oligo)
Usage
1 | compareRNASeqInChip(rnaSeqCandidateSequences, type = "global-local", ...)
|
Arguments
... |
further arguments to pairwiseAlignment method |
character |
vector of sequences to be analysed |
character |
vector of mapping type for pairwiseAlignment method (default: global-local means global oligo and local in the RNA-Seq) |
Value
data.frame with the closest match to each sequence
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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