performGOTermAnalysis: Calls HyperGTest

In SimonSchafferer/Utilities: What the package does (short line)

Description

This function is a wrapper for GO-Term HyperG test. It will allow to modify all parameters for creation of GOHyperGParams object

Usage

performGOTermAnalysis(bg.genes, geneL, conditional = FALSE,
  pvalueCutoff = 0.1, pValCorMethod = "hochberg", ontology = "BP",
  annotation = "org.Mm.eg.db", testDirection = "over", ...)

Arguments

bg.genes	background gene list (ENTREZ IDs)
geneL	genes to test (May be significant genes from Analysis) (ENTREZ IDs)
conditional	(see GOHyperGParams)
ontology	(see GOHyperGParams)
annotation	(see GOHyperGParams)
testDirection	(see GOHyperGParams)
...	(see GOHyperGParams)

Value

List containing the summarized result and the result from the hyperGTest

SimonSchafferer/Utilities documentation built on May 9, 2019, 1:34 p.m.