getEnrichedGenesFromDataset: Get Genes from GO-IDs

In SimonSchafferer/Utilities: What the package does (short line)

Description

This function returns the genes present in the given dataset for each GO-ID

Usage

getEnrichedGenesFromDataset(geneDF, goIDs,
  geneDF_ensembleGeneColumnName = "UID", dataset = "mmusculus_gene_ensembl",
  annotDBIdb = "org.Mm.eg.db")

Arguments

geneDF	dataframe containing the input genes (ensembl_gene_ids)
goIDs	vector of GO-IDs
geneDF_ensembleGeneColumnName	(The column name in the geneDF that represents the ensembl_gene_ids for merging)
dataset	for biomart (human/mouse etc.) - default: mmusculus_gene_ensembl
annotDBIdb	databse default: org.Mm.eg.db

Value

List of Data frames (subset of geneDF plus GOID) splitted by GO-ID

SimonSchafferer/Utilities documentation built on May 9, 2019, 1:34 p.m.